SMTL ID : 4qpz.1 (1 other biounit)

Crystal structure of the formolase FLS_v2 in space group P 21

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.447, M.472, N.474, S.476 Ligands: TPP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.447, A:S.476 MG.3: 5 residues within 4Å: Chain B: D.447, M.472, N.474, S.476 Ligands: TPP.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.447, B:S.476 MG.5: 5 residues within 4Å: Chain C: D.447, M.472, N.474, S.476 Ligands: TPP.6 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.447 MG.7: 5 residues within 4Å: Chain D: D.447, M.472, N.474, S.476 Ligands: TPP.8 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.447, D:S.476

4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)

TPP.2: 27 residues within 4Å: Chain A: G.392, G.393, L.394, T.395, N.418, S.419, M.420, G.446, D.447, G.448, S.449, Y.452, M.472, N.474, S.476, W.477, G.478, W.479, T.480 Chain B: H.25, G.26, E.49, T.72, G.75, N.79, Q.112 Ligands: MG.1 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.477, A:W.477, A:T.480, B:T.72 Hydrogen bonds: A:G.393, A:L.394, A:T.395, A:N.418, A:M.420, A:D.447, A:G.448, A:S.449, A:N.474, A:G.478, A:W.479 TPP.4: 27 residues within 4Å: Chain A: L.24, H.25, G.26, E.49, T.72, G.75, N.79, Q.112 Chain B: G.392, G.393, L.394, T.395, N.418, S.419, M.420, G.446, D.447, G.448, S.449, Y.452, N.474, S.476, W.477, G.478, W.479, T.480 Ligands: MG.3 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:T.480, A:T.72 Hydrogen bonds: B:G.393, B:L.394, B:T.395, B:M.420, B:G.446, B:D.447, B:G.448, B:S.449, B:N.474, B:G.478, B:W.479, A:H.25 TPP.6: 27 residues within 4Å: Chain C: G.392, G.393, L.394, T.395, N.418, S.419, M.420, G.446, D.447, G.448, S.449, Y.452, N.474, S.476, W.477, G.478, W.479, T.480 Chain D: L.24, H.25, G.26, E.49, T.72, G.75, N.79, Q.112 Ligands: MG.5 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:G.393, C:L.394, C:T.395, C:N.418, C:M.420, C:D.447, C:G.448, C:S.449, C:Y.452, C:N.474, C:G.478, C:W.479 Hydrophobic interactions: D:T.72 TPP.8: 27 residues within 4Å: Chain C: L.24, H.25, G.26, E.49, T.72, G.75, N.79, Q.112 Chain D: G.392, G.393, L.394, T.395, N.418, S.419, M.420, G.446, D.447, G.448, S.449, Y.452, N.474, S.476, W.477, G.478, W.479, T.480 Ligands: MG.7 15 PLIP interactions: 13 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:T.480, C:T.72 Hydrogen bonds: D:G.393, D:L.394, D:T.395, D:M.420, D:G.446, D:G.448, D:S.449, D:Y.452, D:N.474, D:N.474, D:G.478, D:W.479, C:H.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siegel, J.B. et al., Computational protein design enables a novel one-carbon assimilation pathway. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-03-11

Peptides

Formolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Formolase

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