SMTL ID : 4qqr.1

Structural insight into nucleotide rhamnose synthase/epimerase-reductase from Arabidopsis thaliana

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.123, G.130, D.135 Ligands: CL.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.123, A:D.135 ZN.2: 3 residues within 4Å: Chain A: R.102, E.159 Chain B: E.80 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.159, A:E.159, B:E.80, B:E.80 ZN.3: 3 residues within 4Å: Chain A: D.77, C.79, H.82 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.77, A:C.79, A:H.82 ZN.4: 5 residues within 4Å: Chain A: G.72, R.73, C.115, M.168, R.262 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.115 ZN.7: 3 residues within 4Å: Chain B: H.123, D.135 Ligands: CL.10 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.123, B:D.135 ZN.8: 2 residues within 4Å: Chain B: C.79, H.82 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.79, B:H.82 ZN.9: 1 residues within 4Å: Chain B: C.115 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.115, H2O.3

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: H.123, D.135 Ligands: ZN.1 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: H.123, D.135 Ligands: ZN.7 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 5 residues within 4Å: Chain A: G.22, W.23, V.70, T.71, R.178 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.23, A:T.71, A:T.71, A:T.71 Salt bridges: A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, X. et al., Structural insight into nucleotide rhamnose synthase/epimerase-reductase from Arabidopsis thaliana. To be Published

Release Date

2015-07-01

Peptides

3,5-epimerase/4-reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3,5-epimerase/4-reductase