SMTL ID : 4qrd.1

Structure of Methionyl-tRNA Synthetase in complex with N-(1H-benzimidazol-2-ylmethyl)-N'-(2,4-dichlorophenyl)-6-(morpholin-4-yl)-1,3,5-triazine-2,4-diamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: K.258 No protein-ligand interaction detected (PLIP)

1 x 3BJ: N-(1H-benzimidazol-2-ylmethyl)-N'-(2,4-dichlorophenyl)-6-(morpholin-4-yl)-1,3,5-triazine-2,4-diamine(Non-covalent)

3BJ.2: 19 residues within 4Å: Chain A: P.38, I.39, Y.41, D.78, H.80, G.81, T.160, F.247, Y.262, V.263, W.264, D.266, A.267, L.268, N.270, Y.271, I.300, F.303, H.304 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:H.80, A:F.247, A:V.263, A:A.267, A:L.268 Hydrogen bonds: A:D.78 Water bridges: A:Y.41, A:E.159, A:T.160, A:Y.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Discovery and SAR of a Novel Series of Pyrimidine Antibacterials Targeting Methionyl-tRNA Synthetase. to be published

Release Date

2015-07-29

Peptides

Methionyl-tRNA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionyl-tRNA synthetase

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