SMTL ID : 4qrs.1

Crystal Structure of HLA B*0801 in complex with ELK_IYM, ELKRKMIYM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU- LEU- LYS- ARG- LYS- MET- ILE- TYR- MET: Major immediate-early protein(Non-covalent)

GLU-LEU-LYS-ARG-LYS-MET-ILE-TYR-MET.1: 36 residues within 4Å: Chain A: Y.7, D.9, S.24, F.36, Y.59, R.62, N.63, I.66, F.67, T.69, N.70, Q.72, T.73, D.74, E.76, S.77, N.80, L.81, Y.84, L.95, S.97, Y.99, N.114, Y.116, Y.123, T.143, K.146, W.147, A.150, V.152, Q.155, D.156, Y.159, T.163, W.167, Y.171 39 PLIP interactions: 39 interactions with chain A Hydrophobic interactions: A:Y.7, A:F.36, A:N.63, A:F.67, A:T.73, A:E.76, A:E.76, A:L.81, A:Y.99, A:T.143, A:A.150, A:V.152, A:Y.159, A:Y.159, A:Y.159, A:T.163, A:W.167 Hydrogen bonds: A:Y.7, A:Y.59, A:N.63, A:N.63, A:N.70, A:N.70, A:Q.72, A:S.77, A:N.80, A:S.97, A:S.97, A:Y.99, A:Y.99, A:N.114, A:T.143, A:D.156, A:Y.159, A:Y.171 Water bridges: A:D.74, A:K.146 Salt bridges: A:R.62, A:K.146

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: H.188, W.204, L.206 Chain B: P.15 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:R.98 Salt bridges: A:H.188 ACT.3: 1 residues within 4Å: Chain B: K.20 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, C. et al., Molecular imprint of exposure to naturally occurring genetic variants of human cytomegalovirus on the T cell repertoire. Sci Rep (2014)

Release Date

2014-12-10

Peptides

HLA class I histocompatibility antigen, B-8 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-8 alpha chain

Beta-2-microglobulin

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