SMTL ID : 4qsf.1

CRYSTAL STRUCTURE of AMIDOHYDROLASE PMI1525 (TARGET EFI-500319) FROM PROTEUS MIRABILIS HI4320, A COMPLEX WITH BUTYRIC ACID AND MANGANESE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.23, H.25, E.166, D.294 Ligands: MN.2, BUA.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.23, A:H.25, A:E.166, A:D.294 MN.2: 6 residues within 4Å: Chain A: Y.126, E.166, H.199, H.229 Ligands: MN.1, BUA.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.166, A:H.199, A:H.229 MN.6: 6 residues within 4Å: Chain B: H.23, H.25, E.166, D.294 Ligands: MN.7, BUA.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.23, B:H.25, B:E.166, B:D.294 MN.7: 6 residues within 4Å: Chain B: Y.126, E.166, H.199, H.229 Ligands: MN.6, BUA.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.166, B:H.199, B:H.229

2 x BUA: butanoic acid(Non-covalent)

BUA.3: 11 residues within 4Å: Chain A: H.23, H.25, N.28, Y.126, E.166, H.199, H.229, D.294, F.296 Ligands: MN.1, MN.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.296 Hydrogen bonds: A:Y.126 Salt bridges: A:H.23, A:H.25, A:H.199, A:H.229 BUA.8: 11 residues within 4Å: Chain B: H.23, H.25, N.28, Y.126, E.166, H.199, H.229, D.294, F.296 Ligands: MN.6, MN.7 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.296 Salt bridges: B:H.23, B:H.25, B:H.199, B:H.229

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: H.353, H.354 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.354 Salt bridges: A:H.353, A:H.354 SO4.5: 6 residues within 4Å: Chain A: M.1, K.2, G.3, K.14, A.344, E.345 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:M.1, A:G.3, A:E.345 Water bridges: A:K.2, A:K.2, A:K.2, A:K.14, A:K.14, A:K.14 Salt bridges: A:K.14 SO4.9: 2 residues within 4Å: Chain B: H.353, H.354 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.354 Salt bridges: B:H.353, B:H.354 SO4.10: 6 residues within 4Å: Chain B: M.1, K.2, G.3, K.14, A.344, E.345 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:M.1, B:M.1, B:G.3, B:E.345 Water bridges: B:K.2, B:K.2, B:K.2, B:K.14, B:K.14, B:K.14 Salt bridges: B:K.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Amidohydrolase Pmi1525 from Proteus Mirabilis Hi4320. To be Published

Release Date

2014-07-30

Peptides

Amidohydrolase Pmi1525: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Amidohydrolase Pmi1525

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