SMTL ID : 4qsz.3 (2 other biounits)

Crystal structure of mouse JMJd7 fused with maltose-binding protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

homo-dimer

Ligands

4 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 10 residues within 4Å: Chain A: N.12, D.14, K.15, A.63, E.111, E.153, Y.155, F.156, W.230 Ligands: GLC.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.12, A:K.15, A:E.111, A:E.111, A:E.111 Salt bridges: A:K.15 GLC.2: 9 residues within 4Å: Chain A: W.62, A.63, D.65, E.153, P.154, Y.155, W.340 Ligands: GLC.1, FLC.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.62, A:E.153, A:Y.155 GLC.4: 10 residues within 4Å: Chain B: N.12, D.14, K.15, A.63, E.111, E.153, Y.155, F.156, W.230 Ligands: GLC.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.12, B:D.14, B:K.15, B:E.111, B:E.111 Salt bridges: B:K.15 GLC.5: 11 residues within 4Å: Chain B: W.62, A.63, D.65, R.66, E.153, P.154, Y.155, M.330, W.340 Ligands: GLC.4, FLC.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.62, B:E.153, B:Y.155

2 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 8 residues within 4Å: Chain A: E.44, E.45, R.66, E.153, W.340, Y.341, R.344 Ligands: GLC.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.341 Hydrogen bonds: A:E.44, A:E.45, A:Y.341 Salt bridges: A:R.66, A:R.344, A:R.344 FLC.6: 9 residues within 4Å: Chain B: E.44, E.45, R.66, E.153, P.154, W.340, Y.341, R.344 Ligands: GLC.5 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.341 Hydrogen bonds: B:E.44, B:E.44, B:E.44, B:E.45, B:Y.341 Salt bridges: B:R.66, B:R.344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., Crystal structure of mouse JMJd7 fused with maltose-binding protein. To be Published

Release Date

2015-07-08

Peptides

Maltose-binding periplasmic protein, JmjC domain-containing protein 7 chimera: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Maltose-binding periplasmic protein, JmjC domain-containing protein 7 chimera

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