SMTL ID : 4qt6.1

Crystal structure of the SPRY domain of human HERC1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

7 x ARF: FORMAMIDE(Non-covalent)

ARF.1: 6 residues within 4Å: Chain A: N.52, E.53, R.79, Y.81, Y.143 Ligands: ARF.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.53, A:R.79 ARF.2: 5 residues within 4Å: Chain A: Y.78, L.95, S.96, F.117, K.119 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.78, A:Y.78, A:S.96 Water bridges: A:S.96, A:K.119 ARF.3: 4 residues within 4Å: Chain A: T.32, G.33, V.34, Y.39 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.33 ARF.4: 2 residues within 4Å: Chain A: F.103, R.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.159 ARF.5: 3 residues within 4Å: Chain A: G.1, Y.39, I.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.39 Water bridges: A:S.31 ARF.6: 5 residues within 4Å: Chain A: N.52, E.53, G.54, S.144 Ligands: ARF.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.52 ARF.7: 5 residues within 4Å: Chain A: C.9, C.10, L.11, G.21, S.22 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.22, A:S.22 Water bridges: A:S.22

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain A: T.71, N.88 No protein-ligand interaction detected (PLIP) UNX.10: 4 residues within 4Å: Chain A: K.42, F.103, N.120, G.121 No protein-ligand interaction detected (PLIP) UNX.11: 2 residues within 4Å: Chain A: N.49, N.52 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain A: T.105, G.121, E.122 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, J. et al., Crystal structure of the SPRY domain of human HERC1. To be Published

Release Date

2015-01-07

Peptides

Probable E3 ubiquitin-protein ligase HERC1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable E3 ubiquitin-protein ligase HERC1