SMTL ID : 4qtg.1

CRYSTAL STRUCTURE of 5-CARBOXYVANILLATE DECARBOXYLASE LIGW2 (TARGET EFI-505250) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 COMPLEXED WITH MANGANESE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: E.41, H.210, D.336 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.41, A:H.210, A:D.336, H2O.7, H2O.15 MN.4: 3 residues within 4Å: Chain B: E.41, H.210, D.336 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.41, B:H.210, B:D.336, H2O.20, H2O.23, H2O.27

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.277, Q.280, A.281, R.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.280, A:A.281 GOL.3: 5 residues within 4Å: Chain A: D.63, Q.184, G.185, P.215, D.216 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.216, A:D.216 Water bridges: A:K.64, A:Q.184, A:Q.184, A:S.217 GOL.5: 5 residues within 4Å: Chain B: D.63, Q.184, G.185, P.215, D.216 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.63, B:Q.184, B:D.216 Water bridges: B:K.64, B:Q.184, B:D.216, B:D.216, B:S.217 GOL.6: 6 residues within 4Å: Chain B: D.329, K.361, T.365, N.366, K.369, W.370 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.365, B:T.365, B:W.370 Water bridges: B:D.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of 5-Carboxyvanillate Decarboxylase LIGW2 from Novosphingobium Aromaticivorans. To be Published

Release Date

2014-08-20

Peptides

5-CARBOXYVANILLATE DECARBOXYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

5-CARBOXYVANILLATE DECARBOXYLASE

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