SMTL ID : 4qu2.3 (2 other biounits)

The structure of JMJD7 with alpha-KG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.180, D.182, H.279 Ligands: AKG.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.180, A:D.182, A:H.279 NI.3: 5 residues within 4Å: Chain B: Q.133, H.180, D.182, H.279 Ligands: AKG.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.180, B:D.182, B:H.279

2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 11 residues within 4Å: Chain A: Y.129, W.169, T.177, H.180, N.186, Y.188, K.195, H.279, V.281, W.293 Ligands: NI.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.169, A:W.169, A:T.177, A:Y.188, A:V.281 Hydrogen bonds: A:Y.129, A:T.177, A:T.177, A:N.186, A:Y.188 Water bridges: A:K.195, A:K.195 Salt bridges: A:K.195, A:H.279 AKG.4: 13 residues within 4Å: Chain B: Y.129, W.169, T.177, H.180, D.182, N.186, Y.188, K.195, H.279, V.281, N.291, W.293 Ligands: NI.3 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.169, B:W.169, B:Y.188, B:V.281 Hydrogen bonds: B:D.182, B:N.186, B:Y.188 Salt bridges: B:K.195, B:H.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H.L. et al., The structure of JMJD7 with alpha-KG. To be Published

Release Date

2015-07-15

Peptides

JmjC domain-containing protein 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

JmjC domain-containing protein 7

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