SMTL ID : 4qu9.1

Caspase-3 F128A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-dimer

Ligands

2 x ACE- ASP- GLU- VAL- ASP- 0QE: ACE-ASP-GLU-VAL-ASP-CHLOROMETHYLKETONE INHIBITOR(Non-covalent)

ACE-ASP-GLU-VAL-ASP-0QE.1: 16 residues within 4Å: Chain A: R.64, S.120, H.121, G.122, Q.161, C.163, Y.204, S.205, W.206, R.207, N.208, S.209, W.214, E.248, S.249, F.250 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:Y.204, A:Y.204, A:W.206, A:W.206 Hydrogen bonds: A:G.122, A:Q.161, A:C.163, A:S.205, A:R.207, A:R.207, A:R.207, A:N.208, A:S.209, A:F.250, A:F.250 Water bridges: A:S.65, A:S.65, A:R.207, A:S.209, A:S.209, A:F.250, A:F.250 Salt bridges: A:R.64, A:R.207, A:R.207 ACE-ASP-GLU-VAL-ASP-0QE.8: 16 residues within 4Å: Chain B: R.64, S.120, H.121, G.122, Q.161, C.163, Y.204, S.205, W.206, R.207, N.208, S.209, W.214, E.248, S.249, F.250 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:Y.204, B:Y.204, B:W.206, B:W.206 Hydrogen bonds: B:H.121, B:G.122, B:Q.161, B:C.163, B:S.205, B:R.207, B:R.207, B:R.207, B:N.208, B:S.209, B:F.250 Water bridges: B:S.63, B:S.65, B:S.65, B:R.207, B:S.209, B:S.209, B:F.250, B:F.250 Salt bridges: B:R.64, B:R.207, B:R.207

12 x AZI: AZIDE ION(Non-covalent)

AZI.2: 3 residues within 4Å: Chain A: N.87, K.88, N.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.87, A:N.89, A:N.89 AZI.3: 2 residues within 4Å: Chain A: N.141, R.147 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.141, A:R.147, A:R.147 AZI.4: 3 residues within 4Å: Chain A: R.86, E.106, R.111 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.86, A:R.111, A:R.111 Water bridges: A:R.86, A:R.86, A:D.107, A:D.107 AZI.5: 3 residues within 4Å: Chain A: N.73, C.220, A.221 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.73 Water bridges: A:N.73, A:N.73, A:N.73, A:C.220, A:A.221, A:A.221 AZI.6: 3 residues within 4Å: Chain A: F.252, D.253, A.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.254 Water bridges: A:T.255, A:T.255 AZI.7: 5 residues within 4Å: Chain A: K.53, G.66, T.67, D.68, V.69 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.66, A:G.66, A:T.67, A:D.68, A:V.69 Water bridges: A:D.68 AZI.9: 3 residues within 4Å: Chain B: N.87, K.88, N.89 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.88, B:N.89, B:N.89 AZI.10: 2 residues within 4Å: Chain B: N.141, R.147 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.141, B:R.147, B:R.147 AZI.11: 3 residues within 4Å: Chain B: R.86, E.106, R.111 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.86, B:E.106, B:R.111, B:R.111 Water bridges: B:R.86, B:R.86, B:D.107, B:D.107 AZI.12: 3 residues within 4Å: Chain B: N.73, C.220, A.221 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.73 Water bridges: B:N.73, B:N.73, B:N.73, B:A.221, B:A.221 AZI.13: 3 residues within 4Å: Chain B: F.252, D.253, A.254 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.252, B:D.253, B:A.254 Water bridges: B:T.255, B:T.255 AZI.14: 5 residues within 4Å: Chain B: K.53, G.66, T.67, D.68, V.69 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.66, B:T.67, B:D.68, B:D.68, B:V.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cade, C. et al., Modifying caspase-3 activity by altering allosteric networks. Biochemistry (2014)

Release Date

2014-11-05

Peptides

Caspase-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Caspase-3