SMTL ID : 4qul.1

Caspase-3 F55W

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x ACE- ASP- GLU- VAL- ASP- 0QE: ACE-ASP-GLU-VAL-ASP-CHLOROMETHYLKETONE INHIBITOR(Non-covalent)

ACE-ASP-GLU-VAL-ASP-0QE.1: 16 residues within 4Å: Chain B: R.64, S.120, H.121, G.122, Q.161, C.163, Y.204, S.205, W.206, R.207, N.208, S.209, W.214, E.248, S.249, F.250 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:H.121, B:Y.204, B:Y.204, B:W.206, B:W.206 Hydrogen bonds: B:H.121, B:Q.161, B:S.205, B:R.207, B:R.207, B:R.207, B:N.208, B:S.209, B:F.250, B:F.250 Water bridges: B:F.250 Salt bridges: B:R.64, B:R.207, B:R.207 ACE-ASP-GLU-VAL-ASP-0QE.2: 17 residues within 4Å: Chain A: R.64, S.65, S.120, H.121, G.122, Q.161, C.163, Y.204, S.205, W.206, R.207, N.208, S.209, W.214, E.248, S.249, F.250 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.204, A:Y.204, A:W.206, A:W.206 Hydrogen bonds: A:G.122, A:Q.161, A:C.163, A:S.205, A:R.207, A:R.207, A:R.207, A:N.208, A:S.209, A:F.250 Salt bridges: A:R.64, A:H.121, A:R.207, A:R.207

3 x AZI: AZIDE ION(Non-covalent)

AZI.3: 7 residues within 4Å: Chain A: K.137, T.140, N.141, R.144, E.190, F.193, Y.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.137, A:K.137, A:Y.195 Water bridges: A:Y.195 AZI.4: 5 residues within 4Å: Chain A: N.208, D.211, W.214, Q.217, F.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.211, A:W.214, A:Q.217 Water bridges: A:N.208, A:N.208 AZI.5: 6 residues within 4Å: Chain A: K.53, S.65, G.66, T.67, D.68, V.69 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.64, A:G.66, A:G.66, A:T.67, A:D.68, A:V.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cade, C. et al., Modifying caspase-3 activity by altering allosteric networks. Biochemistry (2014)

Release Date

2014-11-05

Peptides

Caspase-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Caspase-3