SMTL ID : 4qus.1 (1 other biounit)

1.28 Angstrom resolution crystal structure of predicted acyltransferase with acyl-CoA N-acyltransferase domain (ypeA) from Escherichia coli str. K-12 substr. MG1655

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.66, K.102 Chain B: W.27, N.28 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:N.28 Water bridges: B:W.27, A:K.102, A:K.102, A:K.102, A:Q.104 Salt bridges: A:R.66, A:K.102 PO4.2: 4 residues within 4Å: Chain A: W.27, N.28 Chain B: R.66, K.102 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.28 Water bridges: B:R.66, B:K.102 Salt bridges: B:R.66, B:K.102

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: H.40, D.41 Chain B: H.40, D.41 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.41, A:D.41, A:D.41 EDO.4: 2 residues within 4Å: Chain B: Y.70, Y.71 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.71 Water bridges: B:N.28, B:L.72, B:N.106, B:N.106 EDO.5: 4 residues within 4Å: Chain B: R.79, G.80, R.81, G.82 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.80, B:G.82 Water bridges: B:G.82, B:I.83, B:I.83, B:A.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halavaty, A.S. et al., 1.28 Angstrom resolution crystal structure of predicted acyltransferase with acyl-CoA N-acyltransferase domain (ypeA) from Escherichia coli str. K-12 substr. MG1655. To be Published

Release Date

2014-07-23

Peptides

Acetyltransferase YpeA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acetyltransferase YpeA

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