SMTL ID : 4qvi.1

Crystal structure of mutant ribosomal protein M218L TthL1 in complex with 80nt 23S RNA from Thermus thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 7 residues within 4Å: Chain A: R.74 Chain B: G.21, A.22, C.59, C.60, A.67, U.68 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.74

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: P.2, K.3, H.4, R.9 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.3, A:H.4, A:H.4 Salt bridges: A:K.3, A:R.9 SO4.3: 2 residues within 4Å: Chain A: K.47, R.211 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.47 Salt bridges: A:K.47, A:R.211 SO4.6: 2 residues within 4Å: Chain B: G.8, U.9 No protein-ligand interaction detected (PLIP) SO4.7: 3 residues within 4Å: Chain B: G.6, G.16, U.76 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.168

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: E.86, E.152, R.155 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.152 Water bridges: A:G.151 Salt bridges: A:R.155 ACT.5: 2 residues within 4Å: Chain A: Q.72, K.158 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.72 Water bridges: A:G.91 Salt bridges: A:K.158 ACT.9: 1 residues within 4Å: Chain B: C.38 No protein-ligand interaction detected (PLIP) ACT.10: 2 residues within 4Å: Chain B: C.24, C.25 No protein-ligand interaction detected (PLIP)

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-functional Binders)

MES.8: 8 residues within 4Å: Chain B: A.4, U.5, G.6, C.39, U.40, C.41, U.77, C.78 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tishchenko, S. et al., Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-02-11

Peptides

50S ribosomal protein L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

50S ribosomal protein L1