SMTL ID : 4qxa.1

Crystal structure of the Rab9A-RUTBC2 RBD complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 27 residues within 4Å: Chain A: D.16, G.17, G.18, V.19, G.20, K.21, S.22, S.23, F.33, D.34, S.35, Q.36, L.37, F.38, H.39, T.40, T.64, A.65, G.66, N.125, K.126, D.128, I.129, S.155, A.156, K.157 Ligands: MG.2 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:G.18, A:V.19, A:G.20, A:K.21, A:S.22, A:S.23, A:S.23, A:D.34, A:T.40, A:T.64, A:G.66, A:N.125, A:K.126, A:K.126, A:A.156, A:K.157 Water bridges: A:S.22, A:S.22, A:T.40, A:T.40, A:L.67, A:L.67 Salt bridges: A:K.21, A:K.21, A:H.39, A:D.128 pi-Stacking: A:F.33, A:F.33

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.22, T.40, D.63 Ligands: GTP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.22, A:T.40, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Crystal structure of the Rab9A-RUTBC2 RBD complex reveals the molecular basis for the binding specificity of Rab9A with RUTBC2. Structure (2014)

Release Date

2014-09-10

Peptides

Ras-related protein Rab-9A: A
Small G protein signaling modulator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras-related protein Rab-9A

Small G protein signaling modulator 1