SMTL ID : 4qyt.1 (1 other biounit)

Schizosaccharomyces pombe DJ-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: F.20, W.24, S.36, M.55, Y.56, N.58 Chain B: D.52, V.53, E.54 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.36, B:E.54, B:E.54 Water bridges: A:N.58 EDO.2: 4 residues within 4Å: Chain A: S.66, A.67, D.68, Q.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.67, A:D.68, A:D.68, A:Q.97 Water bridges: A:S.66 EDO.3: 5 residues within 4Å: Chain A: S.50, R.51, G.82, G.83 Chain B: R.29 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.50, A:R.51, A:G.83, B:R.29 Water bridges: A:D.16, A:R.51, A:L.84, A:L.84

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madzelan, P. et al., Influence of peptide dipoles and hydrogen bonds on reactive cysteine pK(a) values in fission yeast DJ-1. Febs J. (2012)

Release Date

2014-08-06

Peptides

Uncharacterized protein C22E12.03c: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein C22E12.03c

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