- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.96 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.2: 7 residues within 4Å:- Chain A: S.105, L.106, S.108, R.112, I.248, M.253
- Ligands: BOG.3
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.106
- Hydrogen bonds: A:R.112
- Salt bridges: A:R.112
LMT.4: 6 residues within 4Å:- Chain A: Y.206, L.267, V.286, L.287, F.291, I.292
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.206, A:L.267, A:V.286, A:F.291, A:I.292
LMT.5: 6 residues within 4Å:- Chain A: H.249, R.251, W.255, T.259, V.313, S.314
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.255, A:W.255, A:W.255
- Hydrogen bonds: A:H.249, A:R.251, A:V.313
- Salt bridges: A:R.251
LMT.6: 7 residues within 4Å:- Chain A: V.88, L.91, G.92, L.301, S.320, V.323
- Chain B: V.26
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:V.26, A:L.91, A:L.301
LMT.10: 9 residues within 4Å:- Chain C: L.102, S.105, L.106, S.108, L.109, R.112, T.132, M.253
- Ligands: BOG.11
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:L.102, C:L.106, C:L.109, C:T.132
- Hydrogen bonds: C:R.112, C:R.112
LMT.12: 9 residues within 4Å:- Chain C: V.88, G.92, V.95, V.297, L.301, G.304, V.323
- Chain D: L.23, V.26
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:V.95, C:V.297, C:L.301, C:V.323
- 4 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.3: 4 residues within 4Å:- Chain A: L.101, S.105, G.257
- Ligands: LMT.2
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.101
BOG.9: 1 residues within 4Å:- Chain C: R.112
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.112
BOG.11: 4 residues within 4Å:- Chain C: M.253, G.257, L.260
- Ligands: LMT.10
No protein-ligand interaction detected (PLIP)BOG.14: 13 residues within 4Å:- Chain C: V.85, H.293, G.294, V.297, I.298, L.301
- Chain D: L.69, F.70, T.71, T.72, L.73, V.74, G.75
13 PLIP interactions:4 interactions with chain C, 9 interactions with chain D- Hydrophobic interactions: C:V.297, C:I.298, C:L.301, D:F.70, D:F.70, D:L.73, D:L.73
- Hydrogen bonds: C:V.297, D:L.69, D:T.71, D:L.73, D:V.74, D:G.75
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bolla, J.R. et al., Crystal structure of the Alcanivorax borkumensis YdaH transporter reveals an unusual topology. Nat Commun (2015)
- Release Date
- 2015-04-29
- Peptides
- AbgT putative transporter family: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.96 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 4 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bolla, J.R. et al., Crystal structure of the Alcanivorax borkumensis YdaH transporter reveals an unusual topology. Nat Commun (2015)
- Release Date
- 2015-04-29
- Peptides
- AbgT putative transporter family: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.