SMTL ID : 4r0l.1

Anti-canine CD28 antibody, 1C6, bound canine CD28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-FUC.1: 5 residues within 4Å: Chain B: N.28, F.30, N.75 Chain F: G.35, N.36 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.30 NAG-NAG-FUC.3: 5 residues within 4Å: Chain C: F.30, N.75 Chain E: G.35, N.36, S.58 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.58, E:N.59

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain B: D.43 Chain C: N.112 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain B: E.33, N.54 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.54 NAG.5: 2 residues within 4Å: Chain B: N.112 Chain C: D.43 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.112 NAG.6: 2 residues within 4Å: Chain B: F.86, N.88 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.88 NAG.7: 3 residues within 4Å: Chain C: E.33, N.54 Chain D: Y.28 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:Y.28 Hydrogen bonds: C:E.33 NAG.8: 1 residues within 4Å: Chain C: N.88 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosinski, S.L. et al., Anti-CD28 Antibody-Initiated Cytokine Storm in Canines. Transplant Direct (2015)

Release Date

2015-07-08

Peptides

Antibody 1C6 Heavy chain: AD
T-cell costimulatory molecule CD28: BC
Antibody 1C6 Light chain: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
H

B
C

C
D

E
L

F
B

Antibody 1C6 Heavy chain

T-cell costimulatory molecule CD28

Antibody 1C6 Light chain

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