SMTL ID : 4r12.1

Crystal structure of the gamma-secretase component Nicastrin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: K.210, N.315, T.317, K.318 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 6 residues within 4Å: Chain A: D.53, N.75, Y.76, N.78, S.81, Y.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.53, A:D.53

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: T.98, D.99, T.100, K.101, N.148 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.101 Hydrogen bonds: A:D.99, A:N.148 NAG.4: 2 residues within 4Å: Chain A: E.366, N.367 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: N.566, S.568, Y.569 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.566

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 3 residues within 4Å: Chain A: D.525, C.528, S.531 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.525, A:C.528, A:S.531, H2O.11, H2O.13, H2O.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, T. et al., Crystal structure of the gamma-secretase component nicastrin. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-09-17

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein