SMTL ID : 4r25.1

Structure of B. subtilis GlnK

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

homo-trimer

Ligands

15 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.44, L.47, Y.48, G.50 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.44 ZN.2: 1 residues within 4Å: Chain A: H.44 No protein-ligand interaction detected (PLIP) ZN.3: 1 residues within 4Å: Chain A: E.54 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.54 ZN.4: 8 residues within 4Å: Chain A: K.5, E.7, K.62, E.64 Chain B: K.62 Chain C: K.5 Ligands: ZN.9, ZN.14 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.7, A:E.64, H2O.1, H2O.1, H2O.1 ZN.5: 2 residues within 4Å: Chain A: H.36, E.59 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.36 ZN.6: 4 residues within 4Å: Chain B: H.44, L.47, Y.48, G.50 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.44 ZN.7: 1 residues within 4Å: Chain B: H.44 No protein-ligand interaction detected (PLIP) ZN.8: 1 residues within 4Å: Chain B: E.54 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.54 ZN.9: 8 residues within 4Å: Chain A: K.5 Chain B: K.5, E.7, K.62, E.64 Chain C: K.62 Ligands: ZN.4, ZN.14 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.7, B:E.64, H2O.1, H2O.1, H2O.1 ZN.10: 2 residues within 4Å: Chain B: H.36, E.59 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.36 ZN.11: 4 residues within 4Å: Chain C: H.44, L.47, Y.48, G.50 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.44 ZN.12: 1 residues within 4Å: Chain C: H.44 No protein-ligand interaction detected (PLIP) ZN.13: 1 residues within 4Å: Chain C: E.54 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.54 ZN.14: 8 residues within 4Å: Chain A: K.62 Chain B: K.5 Chain C: K.5, E.7, K.62, E.64 Ligands: ZN.4, ZN.9 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.7, C:E.64, H2O.1, H2O.1, H2O.1 ZN.15: 2 residues within 4Å: Chain C: H.36, E.59 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumacher, M.A. et al., Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis. Genes Dev. (2015)

Release Date

2015-03-04

Peptides

Nitrogen regulatory PII-like protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Nitrogen regulatory PII-like protein