SMTL ID : 4r2c.1

Egr1/Zif268 zinc fingers in complex with hydroxymethylated DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.11, C.16, H.29, H.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.16, A:H.29, A:H.33 ZN.2: 4 residues within 4Å: Chain A: C.41, C.44, H.57, H.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:C.44, A:H.57, A:H.61 ZN.3: 4 residues within 4Å: Chain A: C.69, C.72, H.85, H.89 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.72, A:H.85, A:H.89

1 x K: POTASSIUM ION(Non-covalent)

K.4: 3 residues within 4Å: Chain A: C.11, V.13, C.16 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.11, A:V.13, A:C.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev. (2014)

Release Date

2014-10-08

Peptides

Early growth response protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Early growth response protein 1

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