SMTL ID : 4r2r.1

Wilms Tumor Protein (WT1) zinc fingers in complex with carboxylated DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.11, C.16, H.29, H.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.16, A:H.29, A:H.33 ZN.2: 4 residues within 4Å: Chain A: C.41, C.44, H.57, H.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:C.44, A:H.57, A:H.61 ZN.3: 4 residues within 4Å: Chain A: C.69, C.74, H.87, H.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.74, A:H.87, A:H.91

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: R.28, S.49, R.50 Chain B: T.5, G.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.49, A:S.49, A:R.50 Water bridges: A:R.28, A:R.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev. (2014)

Release Date

2014-10-08

Peptides

Wilms tumor protein, isoform 4/CRA_a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wilms tumor protein, isoform 4/CRA_a

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