SMTL ID : 4r2s.1

Wilms Tumor Protein (WT1) Q369P zinc fingers in complex with methylated DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.11, C.16, H.29, H.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.16, A:H.29, A:H.33 ZN.2: 4 residues within 4Å: Chain A: C.41, C.44, H.57, H.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:C.44, A:H.57, A:H.61 ZN.3: 4 residues within 4Å: Chain A: C.69, C.74, H.87, H.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.74, A:H.87, A:H.91

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: R.28, R.50, S.51, D.52 Chain C: C.3, G.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.28, A:R.50, A:S.51, A:S.51 EDO.5: 3 residues within 4Å: Chain A: K.37, R.46 Chain B: T.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev. (2014)

Release Date

2014-10-08

Peptides

Wilms tumor protein, isoform 4/CRA_a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wilms tumor protein, isoform 4/CRA_a