- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.93 Å
- Oligo State
- homo-hexamer
- Ligands
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 5 residues within 4Å:- Chain A: G.94, F.160, Q.164, R.166, V.219
Ligand excluded by PLIPCL.8: 5 residues within 4Å:- Chain B: G.94, F.160, Q.164, R.166, V.219
Ligand excluded by PLIPCL.18: 5 residues within 4Å:- Chain D: G.94, F.160, Q.164, R.166, V.219
Ligand excluded by PLIPCL.23: 5 residues within 4Å:- Chain E: G.94, F.160, Q.164, R.166, V.219
Ligand excluded by PLIP- 19 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 12 residues within 4Å:- Chain A: G.24, I.67, R.89, T.92, T.93, F.160, Y.193, E.194, M.195, E.196
- Chain B: R.46
- Ligands: SO4.1
Ligand excluded by PLIPGOL.4: 11 residues within 4Å:- Chain A: V.129, A.130, N.131, F.132, A.205, R.210
- Chain D: Q.109, I.151, G.152, V.153, G.189
Ligand excluded by PLIPGOL.5: 9 residues within 4Å:- Chain A: L.114, R.177, F.178, S.181, E.184, W.185
- Chain C: R.176
- Chain D: P.123, E.125
Ligand excluded by PLIPGOL.6: 6 residues within 4Å:- Chain A: A.141, D.144, A.145, I.242, A.245, K.249
Ligand excluded by PLIPGOL.9: 14 residues within 4Å:- Chain A: H.6, R.46, I.74
- Chain B: I.67, G.68, R.89, T.92, T.93, F.160, Y.193, E.194, M.195, E.196
- Ligands: SO4.7
Ligand excluded by PLIPGOL.10: 9 residues within 4Å:- Chain B: L.114, R.177, F.178, S.181, E.184, W.185
- Chain E: P.123, E.125
- Chain F: R.176
Ligand excluded by PLIPGOL.11: 11 residues within 4Å:- Chain B: V.129, A.130, N.131, F.132, A.205, W.209, R.210
- Chain E: Q.109, I.151, G.152, V.153
Ligand excluded by PLIPGOL.13: 11 residues within 4Å:- Chain C: I.67, R.89, T.92, F.160, Q.164, E.194, M.195, E.196
- Chain D: H.6, R.46
- Ligands: SO4.14
Ligand excluded by PLIPGOL.15: 11 residues within 4Å:- Chain C: V.129, A.130, N.131, F.132, A.205, W.209, R.210
- Chain F: Q.109, I.151, G.152, V.153
Ligand excluded by PLIPGOL.16: 9 residues within 4Å:- Chain C: L.114, R.177, F.178, S.181, E.184, W.185
- Chain E: R.176
- Chain F: P.123, E.125
Ligand excluded by PLIPGOL.19: 9 residues within 4Å:- Chain A: P.123, E.125
- Chain B: R.176
- Chain D: L.114, R.177, F.178, S.181, E.184, W.185
Ligand excluded by PLIPGOL.20: 11 residues within 4Å:- Chain A: Q.109, I.151, G.152, V.153, G.189
- Chain D: V.129, A.130, N.131, F.132, A.205, R.210
Ligand excluded by PLIPGOL.21: 13 residues within 4Å:- Chain C: H.6, R.46
- Chain D: I.67, R.89, T.92, T.93, F.160, Q.164, Y.193, E.194, M.195, E.196
- Ligands: SO4.17
Ligand excluded by PLIPGOL.24: 11 residues within 4Å:- Chain E: I.67, R.89, T.92, T.93, Q.164, Y.193, E.194, M.195, E.196
- Chain F: R.46
- Ligands: SO4.22
Ligand excluded by PLIPGOL.25: 11 residues within 4Å:- Chain B: Q.109, I.151, G.152, V.153, G.189
- Chain E: V.129, A.130, N.131, F.132, A.205, R.210
Ligand excluded by PLIPGOL.26: 9 residues within 4Å:- Chain A: R.176
- Chain B: P.123, E.125
- Chain E: L.114, R.177, F.178, S.181, E.184, W.185
Ligand excluded by PLIPGOL.28: 11 residues within 4Å:- Chain C: Q.109, I.151, G.152, V.153
- Chain F: V.129, A.130, N.131, F.132, A.205, W.209, R.210
Ligand excluded by PLIPGOL.29: 11 residues within 4Å:- Chain E: H.6, R.46
- Chain F: I.67, R.89, T.92, F.160, Q.164, E.194, M.195, E.196
- Ligands: SO4.30
Ligand excluded by PLIPGOL.31: 9 residues within 4Å:- Chain C: P.123, E.125
- Chain D: R.176
- Chain F: L.114, R.177, F.178, S.181, E.184, W.185
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Safonova, T.N. et al., High-syn conformation of uridine and asymmetry of the hexameric molecule revealed in the high-resolution structures of Shewanella oneidensis MR-1 uridine phosphorylase in the free form and in complex with uridine. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-10
- Peptides
- uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
ED
FE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.93 Å
- Oligo State
- homo-hexamer
- Ligands
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 19 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Safonova, T.N. et al., High-syn conformation of uridine and asymmetry of the hexameric molecule revealed in the high-resolution structures of Shewanella oneidensis MR-1 uridine phosphorylase in the free form and in complex with uridine. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-10
- Peptides
- uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
ED
FE
AF
B