SMTL ID : 4r2y.6 (5 other biounits)

Crystal structure of APC11 RING domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.10, H.40, C.43 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:H.40, A:C.43 ZN.2: 4 residues within 4Å: Chain A: C.18, C.21, C.28, H.42 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.18, A:C.21, A:C.28, A:H.42 ZN.3: 4 residues within 4Å: Chain A: C.35, H.37 Chain B: C.57, C.60 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.57, B:C.60, A:C.35, A:H.37 ZN.4: 4 residues within 4Å: Chain B: C.18, C.21, C.28, H.42 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.18, B:C.21, B:C.28, B:H.42 ZN.5: 4 residues within 4Å: Chain B: C.7, C.10, H.40, C.43 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.7, B:C.10, B:H.40, B:C.43 ZN.6: 4 residues within 4Å: Chain A: C.57, C.60 Chain B: C.35, H.37 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.57, A:C.60, B:C.35, B:H.37 ZN.7: 4 residues within 4Å: Chain C: C.7, C.10, H.40, C.43 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.7, C:C.10, C:H.40, C:C.43 ZN.8: 4 residues within 4Å: Chain C: C.18, C.21, C.28, H.42 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.18, C:C.21, C:C.28, C:H.42 ZN.9: 4 residues within 4Å: Chain C: C.35, H.37 Chain D: C.57, C.60 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Metal complexes: C:C.35, C:H.37, D:C.57, D:C.60 ZN.10: 4 residues within 4Å: Chain D: C.18, C.21, C.28, H.42 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.18, D:C.21, D:C.28, D:H.42 ZN.11: 4 residues within 4Å: Chain D: C.7, C.10, H.40, C.43 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.7, D:C.10, D:H.40, D:C.43 ZN.12: 4 residues within 4Å: Chain C: C.57, C.60 Chain D: C.35, H.37 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Metal complexes: D:C.35, D:H.37, C:C.57, C:C.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brown, N.G. et al., Mechanism of Polyubiquitination by Human Anaphase-Promoting Complex: RING Repurposing for Ubiquitin Chain Assembly. Mol.Cell (2014)

Release Date

2014-10-29

Peptides

Anaphase-promoting complex subunit 11: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

Anaphase-promoting complex subunit 11

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