SMTL ID : 4r37.2 (1 other biounit)

Crystal structure analysis of LpxA, a UDP-N-acetylglucosamine acyltransferase from Bacteroides fragilis 9343 with UDP-GlcNAc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

6 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.3: 5 residues within 4Å: Chain A: N.109 Chain B: N.109 Chain C: N.109 Ligands: CA.6, CA.9 No protein-ligand interaction detected (PLIP) CA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.6: 5 residues within 4Å: Chain A: N.109 Chain B: N.109 Chain C: N.109 Ligands: CA.3, CA.9 No protein-ligand interaction detected (PLIP) CA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.9: 5 residues within 4Å: Chain A: N.109 Chain B: N.109 Chain C: N.109 Ligands: CA.3, CA.6 No protein-ligand interaction detected (PLIP)

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: Q.87, N.113, H.135, A.137 Chain C: N.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.113 Water bridges: A:H.138 Salt bridges: A:H.135 ACT.5: 5 residues within 4Å: Chain A: N.150 Chain B: Q.87, N.113, H.135, A.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.113 Water bridges: B:H.138 Salt bridges: B:H.135 ACT.8: 5 residues within 4Å: Chain B: N.150 Chain C: Q.87, N.113, H.135, A.137 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.113 Water bridges: C:H.138 Salt bridges: C:H.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ngo, A. et al., Structures of Bacteroides fragilis uridine 5'-diphosphate-N-acetylglucosamine (UDP-GlcNAc) acyltransferase (BfLpxA). Acta Crystallogr.,Sect.D (2015)

Release Date

2015-05-06

Peptides

Putative acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

Putative acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

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