SMTL ID : 4r3f.1

Structure of the spliceosomal peptidyl-prolyl cis-trans isomerase Cwc27 from Chaetomium thermophilum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: T.23, Q.24, I.56, Y.188, P.189, K.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.23, A:Q.24, A:Y.188 EDO.2: 6 residues within 4Å: Chain A: S.47, L.48, G.50, D.53, N.194, I.195 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.195, A:I.195 Water bridges: A:D.53, A:D.53, A:D.53 EDO.3: 8 residues within 4Å: Chain A: R.59, F.64, I.65, Q.67, A.130, F.143, L.152, N.156 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.59, A:Q.67 Water bridges: A:R.59, A:R.59, A:R.59, A:Q.67, A:N.156 EDO.4: 3 residues within 4Å: Chain A: P.71, T.72 Ligands: PE5.10 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: K.120, E.150, N.153, N.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.120, A:E.150, A:N.153, A:N.154 EDO.6: 1 residues within 4Å: Chain A: K.34 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: D.53, G.54, K.191, I.192, T.193 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.54, A:K.191 EDO.8: 6 residues within 4Å: Chain A: R.41, L.44, Q.45, L.48, N.200, F.202 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.45, A:N.200, A:N.200 Water bridges: A:R.41, A:R.41, A:R.41 EDO.9: 7 residues within 4Å: Chain A: R.123, R.124, G.125, L.126, R.161, V.162, I.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.123, A:R.123

1 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.10: 10 residues within 4Å: Chain A: D.53, G.54, T.55, I.56, D.70, P.71, T.72, G.73, R.185 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.71, A:R.185

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.11: 6 residues within 4Å: Chain A: K.100, G.101, H.102, N.103, P.135, D.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.100 Water bridges: A:K.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ulrich, A. et al., Structure and evolution of the spliceosomal peptidyl-prolyl cis-trans isomerase Cwc27. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-11-19

Peptides

spliceosomal protein CWC27: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

spliceosomal protein CWC27