SMTL ID : 4r3h.2 (1 other biounit)

The crystal structure of an apo RNA binding protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.108, E.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.109 Salt bridges: A:R.108

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 1 residues within 4Å: Chain A: K.43 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: H.77, H.78 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: S.19, N.20, N.24 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: K.18, R.61, E.62 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: K.18, R.61, G.131, R.132 No protein-ligand interaction detected (PLIP) UNX.7: 3 residues within 4Å: Chain A: R.61, R.132, D.133 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Structural basis for selective binding of m(6)A RNA by the YTHDC1 YTH domain. Nat.Chem.Biol. (2014)

Release Date

2014-09-17

Peptides

YTH domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

YTH domain-containing protein 1

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