- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x 3HC: 3-HYDROXYBUTANOYL-COENZYME A(Non-covalent)
- 2 x 3KK: S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} 2-hydroxy-2-methylpropanethioate(Non-covalent)
3KK.2: 34 residues within 4Å:- Chain A: Y.87, T.89, M.90, S.93, R.94, T.97, R.99, I.101, S.126, D.128, S.176, T.178, T.207, Q.209, Q.219, R.246, N.248, N.251, Y.255, H.256, R.295, A.297, F.299, R.339, F.340, H.341, Q.343, Q.374, S.375
- Chain C: F.38, A.42
- Ligands: 3HC.1, 5AD.3, B12.4
30 PLIP interactions:30 interactions with chain A- Hydrophobic interactions: A:T.178, A:Y.255, A:H.341
- Hydrogen bonds: A:M.90, A:S.93, A:R.94, A:R.94, A:T.97, A:S.176, A:T.207, A:Q.209, A:N.251, A:N.251, A:R.339, A:S.375
- Water bridges: A:T.89, A:S.126, A:S.174, A:S.176, A:T.178, A:S.205, A:T.207, A:N.248, A:N.248, A:N.248, A:R.295, A:Q.343
- Salt bridges: A:R.99, A:R.246, A:R.295
3KK.6: 34 residues within 4Å:- Chain A: F.38, A.42
- Chain C: Y.87, T.89, M.90, S.93, R.94, T.97, R.99, I.101, S.126, D.128, S.176, T.178, T.207, Q.209, Q.219, R.246, N.248, N.251, Y.255, H.256, R.295, A.297, F.299, R.339, F.340, H.341, Q.343, Q.374, S.375
- Ligands: 3HC.5, 5AD.7, B12.8
30 PLIP interactions:30 interactions with chain C- Hydrophobic interactions: C:T.178, C:Y.255, C:H.341
- Hydrogen bonds: C:Y.87, C:M.90, C:S.93, C:R.94, C:R.94, C:T.97, C:S.176, C:T.207, C:T.207, C:Q.209, C:N.251, C:N.251, C:R.339, C:S.375
- Water bridges: C:S.126, C:S.174, C:S.174, C:S.176, C:S.205, C:N.248, C:N.248, C:N.248, C:R.295, C:Q.343
- Salt bridges: C:R.99, C:R.246, C:R.295
- 2 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
5AD.3: 15 residues within 4Å:- Chain A: I.101, G.103, D.128, E.151, Y.255, Q.343, A.346, H.377, N.379, E.383, I.387, P.388
- Ligands: 3HC.1, 3KK.2, B12.4
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.103, A:G.103, A:G.103, A:D.128, A:Y.255, A:Q.343, A:N.379
- Water bridges: A:H.377, A:N.379
5AD.7: 15 residues within 4Å:- Chain C: I.101, G.103, D.128, E.151, Y.255, Q.343, A.346, H.377, N.379, E.383, I.387, P.388
- Ligands: 3HC.5, 3KK.6, B12.8
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:G.103, C:G.103, C:G.103, C:Q.343, C:N.379
- Water bridges: C:H.377, C:N.379
- 2 x B12: COBALAMIN(Non-covalent)
B12.4: 45 residues within 4Å:- Chain A: D.128, F.129, M.131, L.134, E.151, A.218, Q.219, E.221, Y.255, H.256, E.259, A.260, A.346, A.347, E.383, A.384, F.385, A.386, I.387
- Chain B: D.27, G.28, H.29, D.30, R.31, G.32, V.36, G.72, V.73, S.74, L.76, S.77, G.78, I.102, A.103, G.104, G.105, L.124, L.125, Q.126, D.127, T.128, I.133
- Ligands: 3HC.1, 3KK.2, 5AD.3
32 PLIP interactions:20 interactions with chain B, 12 interactions with chain A,- Hydrophobic interactions: B:V.36, B:I.102, B:I.102, B:L.124, B:I.133, A:Q.219, A:Y.255, A:A.260, A:A.346, A:I.387
- Hydrogen bonds: B:D.27, B:G.28, B:H.29, B:D.30, B:D.30, B:D.30, B:R.31, B:G.32, B:L.76, B:G.105, B:G.105, B:Q.126, B:Q.126, B:D.127, A:D.128, A:F.129, A:E.151, A:E.221, A:E.221, A:E.383
- Metal complexes: B:H.29
- Water bridges: A:I.387
B12.8: 45 residues within 4Å:- Chain C: D.128, F.129, M.131, L.134, E.151, A.218, Q.219, E.221, Y.255, H.256, E.259, A.260, A.346, A.347, E.383, A.384, F.385, A.386, I.387
- Chain D: D.27, G.28, H.29, D.30, R.31, G.32, V.36, G.72, V.73, S.74, L.76, S.77, G.78, I.102, A.103, G.104, G.105, L.124, L.125, Q.126, D.127, T.128, I.133
- Ligands: 3HC.5, 3KK.6, 5AD.7
29 PLIP interactions:19 interactions with chain D, 10 interactions with chain C,- Hydrophobic interactions: D:V.36, D:I.102, D:I.102, D:L.124, D:I.133, C:Q.219, C:Y.255, C:A.260, C:A.346, C:I.387
- Hydrogen bonds: D:G.28, D:H.29, D:D.30, D:D.30, D:R.31, D:G.32, D:L.76, D:G.105, D:G.105, D:Q.126, D:Q.126, D:D.127, C:F.129, C:E.151, C:E.221, C:E.383
- Water bridges: D:H.29, C:I.387
- Metal complexes: D:H.29
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kurteva-Yaneva, N. et al., Structural basis of the stereospecificity of bacterial B12-dependent 2-hydroxyisobutyryl-CoA mutase. J.Biol.Chem. (2015)
- Release Date
- 2015-03-11
- Peptides
- 2-hydroxyisobutyryl-CoA mutase large subunit: AC
2-hydroxyisobutyryl-CoA mutase small subunit: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
CD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x 3HC: 3-HYDROXYBUTANOYL-COENZYME A(Non-covalent)
- 2 x 3KK: S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} 2-hydroxy-2-methylpropanethioate(Non-covalent)
- 2 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
- 2 x B12: COBALAMIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kurteva-Yaneva, N. et al., Structural basis of the stereospecificity of bacterial B12-dependent 2-hydroxyisobutyryl-CoA mutase. J.Biol.Chem. (2015)
- Release Date
- 2015-03-11
- Peptides
- 2-hydroxyisobutyryl-CoA mutase large subunit: AC
2-hydroxyisobutyryl-CoA mutase small subunit: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
CD
C