SMTL ID : 4r4e.1

Structure of GlnR-DNA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

homo-dimer

Ligands

1 x DA- DT- DT- DC- DT- DG- DA- DC- DA: DNA (5'-D(*AP*TP*TP*CP*TP*GP*AP*CP*A)-3')(Non-covalent)

DA-DT-DT-DC-DT-DG-DA-DC-DA.1: 16 residues within 4Å: Chain A: P.13, I.14, G.15, R.26, R.29, R.41, N.45, R.46, R.47 Ligands: DT-DG-DT-DC-DA-DG-DT-DA.2, DT-DG-DT-DC-DA-DG-DT-DA.2, DT-DG-DT-DC-DA-DG-DT-DA.2, DT-DG-DT-DC-DA-DG-DT-DA.2, DT-DG-DT-DC-DA-DG-DT-DA.2, DT-DG-DT-DC-DA-DG-DT-DA.2, DT-DG-DT-DC-DA-DG-DT-DA.2 Protein-ligand interaction information (PLIP) not available

1 x DT- DG- DT- DC- DA- DG- DT- DA: DNA (5'-D(*TP*GP*TP*CP*AP*GP*TP*A)-3')(Non-covalent)

DT-DG-DT-DC-DA-DG-DT-DA.2: 13 residues within 4Å: Chain A: S.24, R.26, Q.27, Y.30, R.46 Ligands: DA-DT-DT-DC-DT-DG-DA-DC-DA.1, DA-DT-DT-DC-DT-DG-DA-DC-DA.1, DA-DT-DT-DC-DT-DG-DA-DC-DA.1, DA-DT-DT-DC-DT-DG-DA-DC-DA.1, DA-DT-DT-DC-DT-DG-DA-DC-DA.1, DA-DT-DT-DC-DT-DG-DA-DC-DA.1, DA-DT-DT-DC-DT-DG-DA-DC-DA.1, DA-DT-DT-DC-DT-DG-DA-DC-DA.1 Protein-ligand interaction information (PLIP) not available

1 x CXS: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID(Non-covalent)

CXS.3: 5 residues within 4Å: Chain B: I.14, G.44, N.45, R.46, R.47 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.44, B:N.45, B:R.47 Salt bridges: B:R.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumacher, M.A. et al., Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis. Genes Dev. (2015)

Release Date

2015-03-04

Peptides

HTH-type transcriptional regulator GlnR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

HTH-type transcriptional regulator GlnR