SMTL ID : 4r5o.1 (3 other biounits)

Crystal structure of a Quinonprotein alcohol dehydrogenase-like protein (BT1487) from Bacteroides thetaiotaomicron VPI-5482 at 2.64 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

3 x 7PE: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL(Non-functional Binders)

7PE.1: 4 residues within 4Å: Chain A: D.142, T.159, T.161, R.164 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.159, A:T.159, A:T.161, A:R.164 7PE.2: 7 residues within 4Å: Chain A: N.55, R.74, A.75, D.76, S.93, S.95, A.132 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.75 Water bridges: A:R.74 7PE.3: 8 residues within 4Å: Chain A: N.145, S.188, Y.227, N.228, K.277, T.328, G.330, P.376 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.188, A:T.328, A:G.330 Water bridges: A:N.228

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: N.55, Y.67, S.129, A.132, G.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.55, A:Y.67, A:G.133 ACT.5: 5 residues within 4Å: Chain A: D.109, G.110, I.138, G.139, N.140 No protein-ligand interaction detected (PLIP)

4 x CA: CALCIUM ION(Non-covalent)

CA.6: 1 residues within 4Å: Chain A: E.37 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.37 CA.7: 2 residues within 4Å: Chain A: D.252, N.254 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.252, H2O.2, H2O.2, H2O.2, H2O.2 CA.8: 2 residues within 4Å: Chain A: D.356, D.358 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.356, A:D.356, A:D.358 CA.9: 1 residues within 4Å: Chain A: T.412 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.412, H2O.2, H2O.2

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 3 residues within 4Å: Chain A: R.207, N.214, V.216 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Quinonprotein alcohol dehydrogenase-like protein (BT1487) from Bacteroides thetaiotaomicron VPI-5482 at 2.64 A resolution. To be published

Release Date

2014-09-10

Peptides

Quinonprotein alcohol dehydrogenase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Quinonprotein alcohol dehydrogenase-like protein

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