- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- monomer
- Ligands
- 1 x DG- DT- DC- DG- DG: DNA (5'-D(P*GP*TP*CP*GP*G)-3')(Non-covalent)
- 1 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
DUP.2: 18 residues within 4Å:- Chain A: G.179, S.180, R.183, S.188, G.189, D.190, D.192, Y.271, F.272, T.273, G.274, S.275, D.276, N.279
- Chain B: A.6
- Chain C: C.10
- Ligands: MG.3, MG.4
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:D.276
- Hydrogen bonds: A:S.180, A:S.180, A:R.183, A:R.183, A:G.189, A:D.190, A:D.192, A:N.279
- Water bridges: A:R.149, A:S.188, A:D.190, A:D.276
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: D.190, D.192
- Ligands: DUP.2, MG.4
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.190, A:D.192, H2O.1
MG.4: 6 residues within 4Å:- Chain A: D.190, D.192, D.256
- Chain C: C.10
- Ligands: DUP.2, MG.3
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.190, A:D.192, A:D.256, H2O.1
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.5: 6 residues within 4Å:- Chain A: T.101, V.103, S.104, G.105, I.106
- Chain C: G.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.105, A:I.106, A:I.106
NA.6: 4 residues within 4Å:- Chain A: K.60, L.62, V.65
- Ligands: DG-DT-DC-DG-DG.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.62, A:V.65
- Water bridges: A:K.60
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 3 residues within 4Å:- Chain A: E.329, P.330, K.331
Ligand excluded by PLIPCL.8: 4 residues within 4Å:- Chain A: A.32, I.33, H.34, K.35
Ligand excluded by PLIPCL.9: 3 residues within 4Å:- Chain A: Q.159, T.176, V.177
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain A: N.294, Y.296, T.297, R.299
Ligand excluded by PLIPCL.11: 4 residues within 4Å:- Chain A: K.81, L.82, L.85, R.89
Ligand excluded by PLIPCL.12: 2 residues within 4Å:- Chain A: F.25, K.84
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Beard, W.A. et al., Substrate-induced DNA Polymerase beta Activation. J.Biol.Chem. (2014)
- Release Date
- 2014-10-08
- Peptides
- DNA polymerase beta: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- monomer
- Ligands
- 1 x DG- DT- DC- DG- DG: DNA (5'-D(P*GP*TP*CP*GP*G)-3')(Non-covalent)
- 1 x DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Beard, W.A. et al., Substrate-induced DNA Polymerase beta Activation. J.Biol.Chem. (2014)
- Release Date
- 2014-10-08
- Peptides
- DNA polymerase beta: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A