SMTL ID : 4r7g.1

Determination of the formylglycinamide ribonucleotide amidotransferase ammonia pathway by combining 3D-RISM theory with experiment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.687, N.730, D.892, S.894 Ligands: ADP.10 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.687, A:D.892 MG.2: 4 residues within 4Å: Chain A: I.705, E.726, N.730 Ligands: ADP.10 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.726, H2O.9 MG.3: 3 residues within 4Å: Chain A: S.894, E.904 Ligands: ADP.10 No protein-ligand interaction detected (PLIP)

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: H.224, E.302, G.512, A.513, K.784 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.513 Salt bridges: A:H.224, A:K.784 SO4.5: 6 residues within 4Å: Chain A: H.224, T.303, H.304, N.305, H.306, S.786 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.303, A:N.305, A:H.306, A:S.786, A:S.786 Water bridges: A:K.417 Salt bridges: A:H.224 SO4.6: 3 residues within 4Å: Chain A: G.1235, K.1236, V.1237 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.1237 SO4.7: 5 residues within 4Å: Chain A: Q.1184, Q.1191, G.1192, M.1193, V.1194 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.1184, A:Q.1191, A:Q.1191, A:G.1192, A:V.1194, A:V.1194 SO4.8: 4 residues within 4Å: Chain A: P.1048, K.1049, N.1092, H.1094 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.1049, A:K.1049 Salt bridges: A:K.1049 SO4.9: 5 residues within 4Å: Chain A: H.1094, R.1134, P.1135, Q.1136, T.1137 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.1136 Salt bridges: A:H.1094, A:R.1134

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.10: 19 residues within 4Å: Chain A: I.341, F.343, T.394, G.395, Y.396, F.397, K.657, L.660, V.661, Q.676, P.684, A.686, D.687, E.726, N.730, S.894 Ligands: MG.1, MG.2, MG.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:T.394, A:T.394, A:G.395, A:Y.396, A:Y.396, A:K.657, A:Q.676, A:A.686, A:N.730, A:S.894 Water bridges: A:F.397, A:T.653 Salt bridges: A:K.657

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanwar, A.S. et al., Determination of the formylglycinamide ribonucleotide amidotransferase ammonia pathway by combining 3D-RISM theory with experiment. Acs Chem.Biol. (2015)

Release Date

2015-01-21

Peptides

Phosphoribosylformylglycinamidine synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoribosylformylglycinamidine synthase