SMTL ID : 4r7o.1 (6 other biounits)

Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterasefrom Bacillus anthraci

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: E.48, D.50, E.130, Q.166 Ligands: GOL.5 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.48, A:D.50, A:E.130, H2O.4, H2O.4

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: N.214 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.214, A:D.215 SO4.3: 2 residues within 4Å: Chain A: K.103, Q.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.104, A:Q.104 SO4.6: 2 residues within 4Å: Chain A: K.210, R.211 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.210, A:K.210, A:K.210 Salt bridges: A:K.210, A:R.211 SO4.7: 1 residues within 4Å: Chain A: K.210 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.210

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: L.268, K.271, W.272 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.271, A:W.272

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: H.21, E.48, E.130, Q.166, F.168, L.188, Y.258, F.278 Ligands: MG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.166 Water bridges: A:R.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterasefrom Bacillus anthraci. To be Published

Release Date

2014-09-10

Peptides

Glycerophosphoryl diester phosphodiesterase, putative: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycerophosphoryl diester phosphodiesterase, putative

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