SMTL ID : 4r8i.1

High Resolution Structure of a Mirror-Image RNA Oligonucleotide Aptamer in Complex with the Chemokine CCL2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain B: X.31 No protein-ligand interaction detected (PLIP)

1 x SR: STRONTIUM ION(Non-functional Binders)

SR.2: 3 residues within 4Å: Chain B: C.9, C.11, X.12 No protein-ligand interaction detected (PLIP)

5 x K: POTASSIUM ION(Non-functional Binders)

K.3: 1 residues within 4Å: Chain B: U.6 No protein-ligand interaction detected (PLIP) K.4: 1 residues within 4Å: Chain B: U.6 No protein-ligand interaction detected (PLIP) K.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) K.6: 2 residues within 4Å: Chain B: G.32, G.33 No protein-ligand interaction detected (PLIP) K.7: 1 residues within 4Å: Chain B: C.13 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oberthur, D. et al., Crystal structure of a mirror-image L-RNA aptamer (Spiegelmer) in complex with the natural L-protein target CCL2. Nat Commun (2015)

Release Date

2015-04-29

Peptides

C-C motif chemokine 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C-C motif chemokine 2

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