SMTL ID : 4r8m.2 (1 other biounit)

Human SIRT2 crystal structure in complex with BHJH-TM1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x PRO- LYS- LYS- THR- GLY: BHJH-TM1 peptide(Non-covalent)

PRO-LYS-LYS-THR-GLY.1: 15 residues within 4Å: Chain A: E.79, H.150, V.196, F.197, F.198, G.199, E.200, S.201, L.202, F.207, Q.228, V.229, Q.230, P.231 Ligands: 3LX.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.198, A:L.202, A:F.207 Hydrogen bonds: A:V.196, A:G.199, A:E.200, A:S.201, A:Q.230, A:Q.230

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.158, C.163, C.184, C.187 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.158, A:C.163, A:C.184, A:C.187

1 x 3LX: tridecanethial(Non-covalent)

3LX.3: 11 residues within 4Å: Chain A: F.59, F.82, F.94, L.97, P.103, F.106, I.132, H.150, F.153, V.196 Ligands: PRO-LYS-LYS-THR-GLY.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.59, A:F.59, A:F.82, A:F.94, A:L.97, A:F.106, A:I.132, A:F.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teng, Y.B. et al., Efficient Demyristoylase Activity of SIRT2 Revealed by Kinetic and Structural Studies. Sci Rep (2015)

Release Date

2015-03-11

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NAD-dependent protein deacetylase sirtuin-2

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