SMTL ID : 4r97.1

Crystal structure of the Fab fragment of KKO

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.151, H.189 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.151, A:H.189 ZN.6: 3 residues within 4Å: Chain A: N.138, D.167 Chain B: H.170 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.167, B:H.170, H2O.2, H2O.2

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: K.24, T.69, D.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.24, A:T.69 GOL.3: 3 residues within 4Å: Chain A: K.142, D.143, W.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.142, A:D.143, A:D.143 GOL.4: 1 residues within 4Å: Chain A: N.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.157 GOL.5: 4 residues within 4Å: Chain A: P.40, G.41, D.165 Chain B: T.171 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Water bridges: B:V.169, B:T.171 Hydrogen bonds: A:D.165, A:D.165, A:D.165 GOL.7: 5 residues within 4Å: Chain A: G.41, Q.42, S.43 Chain B: Y.94, Q.111 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.41, A:Q.42, A:S.43, B:Y.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cai, Z. et al., Atomic description of the immune complex involved in heparin-induced thrombocytopenia. Nat Commun (2015)

Release Date

2015-12-16

Peptides

platelet factor 4 antibody KKO light chain: A
platelet factor 4 antibody KKO heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

platelet factor 4 antibody KKO light chain

platelet factor 4 antibody KKO heavy chain

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