SMTL ID : 4r9g.3 (2 other biounits)

CpMnBP1 with Mannotriose Bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x MAN- BMA- BMA: beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose(Non-covalent)

MAN-BMA-BMA.1: 13 residues within 4Å: Chain A: W.51, D.55, W.112, N.163, R.165, Q.217, V.219, H.221, N.277, S.278, W.298, N.333, N.369 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.112, A:N.163, A:N.163, A:N.333, A:N.369, A:N.369, A:H.221 Water bridges: A:D.55, A:D.55, A:A.87, A:N.417 MAN-BMA-BMA.2: 13 residues within 4Å: Chain B: W.51, D.55, W.112, N.163, R.165, Q.217, V.219, H.221, N.277, S.278, W.298, N.333, N.369 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.112, B:N.163, B:N.163, B:N.333, B:N.369, B:N.369, B:Q.217, B:H.221 Water bridges: B:D.55, B:D.55, B:Y.111, B:H.221

8 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: G.53, D.57 Chain B: G.53, D.57 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:D.57, A:D.57, H2O.2, H2O.11, H2O.13 ZN.4: 3 residues within 4Å: Chain A: D.115, H.221, E.413 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.115, A:H.221, A:E.413, H2O.1 ZN.5: 2 residues within 4Å: Chain A: Y.66, H.70 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.70, H2O.2, H2O.6, H2O.7 ZN.6: 2 residues within 4Å: Chain A: H.343, E.346 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.343, A:E.346, H2O.1 ZN.7: 3 residues within 4Å: Chain B: Y.66, H.70, D.349 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.70, H2O.10 ZN.8: 2 residues within 4Å: Chain B: H.343, E.346 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.343, B:E.346 ZN.9: 3 residues within 4Å: Chain B: D.180, P.181, N.182 No protein-ligand interaction detected (PLIP) ZN.10: 3 residues within 4Å: Chain B: D.115, H.221, E.413 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.115, B:H.221, B:E.413, H2O.9, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chekan, J.R. et al., Structural and Biochemical Basis for Mannan Utilization by Caldanaerobius polysaccharolyticus Strain ATCC BAA-17. J.Biol.Chem. (2014)

Release Date

2014-10-29

Peptides

MBP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MBP1

Related Entries With Identical Sequence