SMTL ID : 4r9j.3 (3 other biounits)

L-ficolin complexed to glucosamine-6-sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: G.21, W.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.22 ACT.3: 7 residues within 4Å: Chain A: F.165, N.173, C.174, H.175, F.191, A.192, Y.203 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.165, A:F.191, A:A.192, A:Y.203 Hydrogen bonds: A:C.174, A:H.175, A:H.175

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.153, D.155, N.157, G.159 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.153, A:D.153, A:G.159, H2O.2, H2O.2

2 x 3LJ: 2-amino-2-deoxy-6-O-sulfo-alpha-D-glucopyranose(Non-covalent)

3LJ.4: 4 residues within 4Å: Chain A: R.61, D.62, T.65, K.150 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.62, A:T.65, A:T.65 Water bridges: A:R.61, A:R.61 Salt bridges: A:R.61, A:K.150 3LJ.5: 4 residues within 4Å: Chain A: R.112, S.113, G.128, A.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laffly, E. et al., Human ficolin-2 recognition versatility extended: An update on the binding of ficolin-2 to sulfated/phosphated carbohydrates. Febs Lett. (2014)

Release Date

2014-11-05

Peptides

Ficolin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ficolin-2

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