SMTL ID : 4ra0.1

An engineered Axl 'decoy receptor' effectively silences the Gas6-Axl signaling axis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.07 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: R.31, G.62, H.63, H.141, N.143 Chain C: E.31 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:E.31 NAG-NAG.2: 6 residues within 4Å: Chain B: R.31, R.33, G.61, G.62, N.143 Chain D: P.32 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.33

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.52, E.54, R.163, D.379 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.52, A:D.52, A:E.54, A:R.163, A:D.379 CA.5: 5 residues within 4Å: Chain B: D.52, E.54, R.163, D.379, H.391 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.52, B:D.52, B:E.54, B:R.163, B:D.379

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: R.169 Ligand excluded by PLIP

2 x NI: NICKEL (II) ION(Non-covalent)

NI.6: 1 residues within 4Å: Chain C: H.154 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.154, C:H.154 NI.8: 1 residues within 4Å: Chain D: H.154 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.154

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain C: R.116, F.124, N.125 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.125, C:N.125 Salt bridges: C:R.116 SO4.9: 3 residues within 4Å: Chain D: R.116, F.124, N.125 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.125, D:N.125, D:N.125 Salt bridges: D:R.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kariolis, M.S. et al., An engineered Axl 'decoy receptor' effectively silences the Gas6-Axl signaling axis. Nat.Chem.Biol. (2014)

Release Date

2014-09-24

Peptides

Growth arrest-specific protein 6: AB
Tyrosine-protein kinase receptor UFO: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Growth arrest-specific protein 6

Tyrosine-protein kinase receptor UFO