- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 3L4: [(2-{[2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)ethyl][(E)-2-phosphonoethenyl]amino}ethoxy)methyl]phosphonic acid(Non-covalent)
3L4.1: 21 residues within 4Å:- Chain A: L.67, K.68, G.69, L.101, D.134, I.135, I.136, D.137, T.138, G.139, K.140, T.141, K.165, K.185, F.186, V.187, L.192, D.193, R.199
- Ligands: MG.2, MG.3
26 PLIP interactions:26 interactions with chain A- Hydrogen bonds: A:K.68, A:G.69, A:D.137, A:T.138, A:G.139, A:K.140, A:T.141, A:T.141, A:K.165, A:V.187, A:V.187, A:V.187, A:D.193, A:R.199, A:R.199
- Water bridges: A:G.70, A:R.100, A:T.138, A:T.138, A:M.142, A:D.193, A:D.193, A:D.193, A:D.193
- pi-Stacking: A:F.186
- pi-Cation interactions: A:F.186
3L4.4: 20 residues within 4Å:- Chain B: L.67, K.68, G.69, L.101, D.134, I.135, I.136, D.137, T.138, G.139, K.140, T.141, K.165, K.185, F.186, V.187, L.192, D.193, R.199
- Ligands: MG.5
21 PLIP interactions:21 interactions with chain B- Hydrogen bonds: B:K.68, B:G.69, B:D.137, B:D.137, B:T.138, B:G.139, B:K.140, B:T.141, B:K.165, B:V.187, B:V.187, B:V.187, B:D.193, B:D.193, B:R.199, B:R.199
- Water bridges: B:G.70, B:R.100, B:M.142
- pi-Stacking: B:F.186
- pi-Cation interactions: B:F.186
3L4.7: 20 residues within 4Å:- Chain C: L.67, K.68, G.69, L.101, D.134, I.135, I.136, D.137, T.138, G.139, K.140, T.141, K.165, K.185, F.186, V.187, L.192, D.193, R.199
- Ligands: MG.9
20 PLIP interactions:20 interactions with chain C- Hydrogen bonds: C:K.68, C:G.69, C:D.137, C:D.137, C:D.137, C:T.138, C:G.139, C:K.140, C:T.141, C:T.141, C:K.165, C:V.187, C:V.187, C:V.187, C:D.193, C:R.199, C:R.199
- Water bridges: C:R.100, C:M.142
- pi-Stacking: C:F.186
3L4.10: 12 residues within 4Å:- Chain D: I.135, D.137, T.138, G.139, T.141, K.165, K.185, F.186, V.187, L.192, D.193, R.199
18 PLIP interactions:18 interactions with chain D- Hydrogen bonds: D:D.137, D:D.137, D:T.138, D:G.139, D:T.141, D:T.141, D:T.141, D:T.141, D:K.165, D:V.187, D:V.187, D:V.187, D:D.193, D:D.193, D:D.193, D:R.199
- Water bridges: D:D.193
- pi-Stacking: D:F.186
- 7 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: D.193
- Ligands: 3L4.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.193, H2O.1, H2O.1, H2O.1, H2O.3
MG.3: 3 residues within 4Å:- Chain A: E.133, D.134
- Ligands: 3L4.1
6 PLIP interactions:2 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:E.133, A:D.134, H2O.1, H2O.1, H2O.1, H2O.1
MG.5: 2 residues within 4Å:- Chain B: D.193
- Ligands: 3L4.4
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.193, H2O.4, H2O.4, H2O.4, H2O.6
MG.6: 2 residues within 4Å:- Chain B: E.133, D.134
6 PLIP interactions:2 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:E.133, B:D.134, H2O.3, H2O.5, H2O.5, H2O.5
MG.8: 2 residues within 4Å:- Chain C: E.133, D.134
6 PLIP interactions:2 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:E.133, C:D.134, H2O.6, H2O.6, H2O.6, H2O.8
MG.9: 2 residues within 4Å:- Chain C: D.193
- Ligands: 3L4.7
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.193, H2O.6, H2O.8, H2O.8, H2O.8
MG.11: 2 residues within 4Å:- Chain D: E.133, D.134
5 PLIP interactions:2 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:E.133, D:D.134, H2O.9, H2O.9, H2O.9
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Keough, D.T. et al., Aza-acyclic Nucleoside Phosphonates Containing a Second Phosphonate Group As Inhibitors of the Human, Plasmodium falciparum and vivax 6-Oxopurine Phosphoribosyltransferases and Their Prodrugs As Antimalarial Agents. J.Med.Chem. (2015)
- Release Date
- 2015-01-07
- Peptides
- Hypoxanthine-guanine phosphoribosyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 3L4: [(2-{[2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)ethyl][(E)-2-phosphonoethenyl]amino}ethoxy)methyl]phosphonic acid(Non-covalent)
- 7 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Keough, D.T. et al., Aza-acyclic Nucleoside Phosphonates Containing a Second Phosphonate Group As Inhibitors of the Human, Plasmodium falciparum and vivax 6-Oxopurine Phosphoribosyltransferases and Their Prodrugs As Antimalarial Agents. J.Med.Chem. (2015)
- Release Date
- 2015-01-07
- Peptides
- Hypoxanthine-guanine phosphoribosyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D