SMTL ID : 4raz.1 (1 other biounit)

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 holo-Fur

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.89, D.91, E.110, H.127 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.89, A:D.91, A:E.110, A:H.127, H2O.4 MN.2: 5 residues within 4Å: Chain A: H.35, E.83, H.90, H.92, E.103 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.35, A:E.83, A:H.90, A:H.92, A:E.103 MN.5: 4 residues within 4Å: Chain B: H.89, D.91, E.110, H.127 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.89, B:D.91, B:E.110, B:H.127, H2O.8 MN.6: 5 residues within 4Å: Chain B: H.35, E.83, H.90, H.92, E.103 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.35, B:E.83, B:H.90, B:H.92, B:E.103

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: R.22, T.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.22 Water bridges: A:T.19, A:R.22 EDO.4: 2 residues within 4Å: Chain A: F.75, A.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.75 Water bridges: A:R.81 EDO.7: 1 residues within 4Å: Chain B: P.50 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, Z. et al., Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator. Nat Commun

Release Date

2015-07-15

Peptides

DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family)

Related Entries With Identical Sequence