- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.88 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x AQH: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3R,4R,5R,6S)-6-[(1R)-1,2-DIHYDROXYETHYL]-3,4,5-TRIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL DIHYDROGEN DIPHOSPHATE(Covalent)(Non-covalent)
AQH.2: 23 residues within 4Å:- Chain A: T.107, L.108, G.109, A.110, F.187, Q.224, S.225, T.226, K.230, I.255, D.256, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, W.305, F.320, S.321, E.326
19 PLIP interactions:19 interactions with chain A- Hydrogen bonds: A:T.107, A:L.108, A:G.109, A:G.109, A:T.226, A:K.230, A:D.256, A:D.256, A:R.257, A:R.257, A:D.258, A:L.281, A:R.286, A:S.301, A:G.302, A:S.321, A:E.326
- Salt bridges: A:K.230, A:K.230
AQH.4: 20 residues within 4Å:- Chain B: G.106, T.107, L.108, G.109, F.187, Q.224, S.225, T.226, I.255, D.256, R.257, G.279, K.280, L.281, R.286, P.300, S.301, G.302, L.303, W.305
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.256, B:D.256, B:L.281, B:R.286, B:G.302
AQH.7: 22 residues within 4Å:- Chain C: T.107, L.108, G.109, A.110, F.187, Q.224, S.225, T.226, K.230, I.255, D.256, R.257, L.283, R.286, P.300, S.301, G.302, L.303, W.305, F.320, E.326, W.343
17 PLIP interactions:17 interactions with chain C- Hydrogen bonds: C:T.107, C:T.107, C:L.108, C:G.109, C:T.226, C:T.226, C:K.230, C:D.256, C:R.257, C:R.257, C:L.281, C:R.286, C:G.302, C:W.305, C:E.326
- Salt bridges: C:K.230, C:K.230
AQH.9: 21 residues within 4Å:- Chain D: T.107, L.108, G.109, F.187, Q.224, S.225, T.226, K.230, I.255, D.256, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, W.305, E.326, W.343
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:K.230, D:D.256, D:R.257, D:L.281, D:R.286, D:G.302, D:E.326
- Salt bridges: D:K.230, D:K.230
AQH.11: 22 residues within 4Å:- Chain E: T.107, L.108, G.109, A.110, F.187, Q.224, S.225, T.226, K.230, I.255, D.256, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, F.320, E.326, W.343
16 PLIP interactions:16 interactions with chain E- Hydrogen bonds: E:T.107, E:T.107, E:L.108, E:G.109, E:T.226, E:T.226, E:T.226, E:D.256, E:R.257, E:R.257, E:L.281, E:R.286, E:G.302, E:W.343
- Salt bridges: E:K.230, E:K.230
AQH.13: 21 residues within 4Å:- Chain F: L.108, G.109, A.110, F.187, Q.224, S.225, T.226, K.230, D.256, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, W.305, F.320, E.326, W.343
12 PLIP interactions:12 interactions with chain F- Hydrogen bonds: F:L.108, F:L.108, F:T.226, F:T.226, F:K.230, F:D.256, F:L.281, F:R.286, F:G.302, F:W.343
- Salt bridges: F:K.230, F:K.230
AQH.15: 23 residues within 4Å:- Chain G: T.107, L.108, G.109, A.110, F.187, Q.224, S.225, T.226, K.230, I.255, D.256, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, W.305, F.320, S.321, E.326
20 PLIP interactions:20 interactions with chain G- Hydrogen bonds: G:T.107, G:T.107, G:L.108, G:G.109, G:A.110, G:T.226, G:T.226, G:K.230, G:R.257, G:R.257, G:D.258, G:L.281, G:R.286, G:P.300, G:G.302, G:S.321, G:E.326, G:E.326
- Salt bridges: G:K.230, G:K.230
AQH.17: 20 residues within 4Å:- Chain H: T.107, L.108, G.109, A.110, F.187, Q.224, S.225, T.226, K.230, D.256, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, W.305, E.326
16 PLIP interactions:16 interactions with chain H- Hydrogen bonds: H:L.108, H:G.109, H:A.110, H:T.226, H:T.226, H:T.226, H:D.256, H:D.256, H:R.257, H:R.257, H:L.281, H:R.286, H:G.302, H:E.326
- Salt bridges: H:K.230, H:K.230
AQH.19: 22 residues within 4Å:- Chain I: T.107, L.108, G.109, A.110, F.187, Q.224, S.225, T.226, K.230, I.255, D.256, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, F.320, E.326, W.343
12 PLIP interactions:12 interactions with chain I- Hydrogen bonds: I:T.107, I:T.107, I:L.108, I:T.226, I:D.256, I:R.257, I:L.281, I:R.286, I:G.302, I:E.326
- Salt bridges: I:K.230, I:K.230
AQH.22: 22 residues within 4Å:- Chain J: T.107, L.108, G.109, A.110, F.187, Q.224, S.225, T.226, K.230, I.255, D.256, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, W.305, F.320, E.326
20 PLIP interactions:20 interactions with chain J- Hydrogen bonds: J:T.107, J:T.107, J:T.107, J:L.108, J:G.109, J:T.226, J:T.226, J:T.226, J:K.230, J:D.256, J:D.256, J:R.257, J:L.281, J:R.286, J:G.302, J:W.305, J:E.326, J:E.326
- Salt bridges: J:K.230, J:K.230
AQH.25: 19 residues within 4Å:- Chain K: T.107, L.108, G.109, A.110, F.187, T.226, K.230, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, W.305, F.320, E.326, W.343
15 PLIP interactions:15 interactions with chain K- Hydrogen bonds: K:T.107, K:L.108, K:G.109, K:T.226, K:R.257, K:L.281, K:R.286, K:G.302, K:W.305, K:S.325, K:E.326, K:E.326, K:W.343
- Salt bridges: K:K.230, K:K.230
AQH.27: 20 residues within 4Å:- Chain L: T.107, G.109, A.110, F.187, Q.224, S.225, T.226, K.230, R.257, L.281, L.283, R.286, P.300, S.301, G.302, L.303, W.305, F.320, E.326, W.343
14 PLIP interactions:14 interactions with chain L- Hydrogen bonds: L:G.109, L:T.226, L:T.226, L:K.230, L:R.257, L:R.257, L:L.281, L:L.281, L:R.286, L:G.302, L:S.325, L:S.325
- Salt bridges: L:K.230, L:K.230
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 3 residues within 4Å:- Chain C: R.189, R.200, E.201
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.189, C:R.189, C:E.201
EDO.21: 3 residues within 4Å:- Chain J: R.189, R.200, E.201
No protein-ligand interaction detected (PLIP)EDO.24: 3 residues within 4Å:- Chain K: R.189, R.200, E.201
2 PLIP interactions:2 interactions with chain K- Hydrogen bonds: K:R.189, K:E.201
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yao, Q. et al., A structural mechanism for bacterial autotransporter glycosylation by a dodecameric heptosyltransferase family. Elife (2014)
- Release Date
- 2014-11-05
- Peptides
- Glycosyltransferase tibC: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
LC
CD
DE
EF
HG
BH
FI
GJ
IK
JL
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.88 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x AQH: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3R,4R,5R,6S)-6-[(1R)-1,2-DIHYDROXYETHYL]-3,4,5-TRIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL DIHYDROGEN DIPHOSPHATE(Covalent)(Non-covalent)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yao, Q. et al., A structural mechanism for bacterial autotransporter glycosylation by a dodecameric heptosyltransferase family. Elife (2014)
- Release Date
- 2014-11-05
- Peptides
- Glycosyltransferase tibC: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
LC
CD
DE
EF
HG
BH
FI
GJ
IK
JL
A