SMTL ID : 4rbx.1

Crystal structure of human alpha-defensin 5, HD5 (Glu21Arg mutant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.8, R.9, R.28 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.28 SO4.2: 4 residues within 4Å: Chain A: R.9, C.10, L.16, R.28 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:C.10 Water bridges: A:R.9, A:R.9, A:E.14 Salt bridges: A:R.9, A:R.28 SO4.3: 3 residues within 4Å: Chain A: R.6, T.7, G.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.7, A:T.7, A:G.8 Water bridges: A:R.6 Salt bridges: A:R.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Design of a potent antibiotic peptide based on the active region of human defensin 5. J.Med.Chem. (2015)

Release Date

2015-07-29

Peptides

Defensin-5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Defensin-5