SMTL ID : 4rc8.1 (1 other biounit)

Crystal structure of cyanobacterial aldehyde-deformylating oxygenase bound with fatty acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x STE: STEARIC ACID(Non-covalent)

STE.1: 20 residues within 4Å: Chain A: Y.12, I.15, N.16, I.18, V.19, G.22, E.23, A.26, E.51, F.58, Q.101, I.105, E.106, F.108, A.112, Y.113, Y.116, M.184 Ligands: FE.2, FE.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.15, A:I.18, A:V.19, A:F.58, A:F.58, A:I.105, A:F.108, A:A.112, A:Y.113, A:Y.116, A:Y.116, A:Y.116 Hydrogen bonds: A:Q.101, A:E.135

2 x FE: FE (III) ION(Non-covalent)

FE.2: 5 residues within 4Å: Chain A: E.51, E.106, H.138 Ligands: STE.1, FE.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.51, A:E.106, A:E.106, A:H.138, H2O.1 FE.3: 5 residues within 4Å: Chain A: E.23, E.51, H.54 Ligands: STE.1, FE.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.23, A:E.51, A:H.54, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, C. et al., Structural insights into the catalytic mechanism of aldehyde-deformylating oxygenases. Protein Cell (2015)

Release Date

2014-12-17

Peptides

Aldehyde decarbonylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldehyde decarbonylase

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