SMTL ID : 4rci.2 (3 other biounits)

Crystal structure of YTHDF1 YTH domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

11 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain A: H.57, R.61 No protein-ligand interaction detected (PLIP) UNX.2: 4 residues within 4Å: Chain A: E.40, V.81, C.88, I.173 No protein-ligand interaction detected (PLIP) UNX.3: 4 residues within 4Å: Chain A: K.36, S.37, W.52 Ligands: UNX.6 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain A: R.61, S.64 No protein-ligand interaction detected (PLIP) UNX.5: 1 residues within 4Å: Chain A: R.61 No protein-ligand interaction detected (PLIP) UNX.6: 5 residues within 4Å: Chain A: S.37, Y.38, D.42, W.52 Ligands: UNX.3 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: S.54, T.55, G.58, D.148 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain A: R.67 No protein-ligand interaction detected (PLIP) UNX.9: 5 residues within 4Å: Chain A: F.23, E.24, L.27, Y.76 Ligands: UNX.11 No protein-ligand interaction detected (PLIP) UNX.10: 3 residues within 4Å: Chain A: R.61, S.64, A.65 No protein-ligand interaction detected (PLIP) UNX.11: 3 residues within 4Å: Chain A: F.23, E.24 Ligands: UNX.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins. J.Biol.Chem. (2015)

Release Date

2014-10-01

Peptides

YTH domain-containing family protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

YTH domain-containing family protein 1

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