SMTL ID : 4rd7.1

The crystal structure of a Cupin 2 conserved barrel domain protein from Salinispora arenicola CNS-205

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-dimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: L.16, R.21 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.19 Salt bridges: A:R.21 SO4.2: 2 residues within 4Å: Chain A: R.75, P.76 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.75, A:R.75 Salt bridges: A:R.75 SO4.3: 2 residues within 4Å: Chain A: R.24, W.107 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.107 Salt bridges: A:R.24 SO4.4: 2 residues within 4Å: Chain A: R.119, H.120 No protein-ligand interaction detected (PLIP) SO4.5: 2 residues within 4Å: Chain A: R.65, H.78 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.65, A:H.78 SO4.7: 2 residues within 4Å: Chain B: L.16, R.21 2 PLIP interactions: 2 interactions with chain B Water bridges: B:N.19 Salt bridges: B:R.21 SO4.8: 2 residues within 4Å: Chain B: R.75, P.76 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.75, B:R.75 Salt bridges: B:R.75 SO4.9: 2 residues within 4Å: Chain B: R.24, W.107 2 PLIP interactions: 2 interactions with chain B Water bridges: B:W.107 Salt bridges: B:R.24 SO4.10: 2 residues within 4Å: Chain B: R.119, H.120 No protein-ligand interaction detected (PLIP) SO4.11: 2 residues within 4Å: Chain B: R.65, H.78 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.65, B:H.78

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: N.18, H.51, E.57, M.103, A.105, W.107 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.18, A:E.57 GOL.12: 6 residues within 4Å: Chain B: N.18, H.51, E.57, M.103, A.105, W.107 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.18, B:E.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a Cupin 2 conserved barrel domain protein from Salinispora arenicola CNS-205. To be Published

Release Date

2014-10-01

Peptides

Cupin 2 conserved barrel domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cupin 2 conserved barrel domain protein