SMTL ID : 4rem.1

Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase in complex with delphinidin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x DLM: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)CHROMENIUM(Non-covalent)

DLM.1: 17 residues within 4Å: Chain A: F.14, H.17, P.78, I.79, L.82, F.116, N.137, Y.145, P.179, D.181, F.192, L.196, V.274, F.365, G.366, D.367 Ligands: GOL.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.82, A:F.116, A:F.116, A:F.192, A:F.365 Hydrogen bonds: A:P.78, A:N.137, A:Y.145, A:Y.145 Water bridges: A:F.14, A:D.181

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Y.145, F.146, N.147, I.148, D.149, G.200, V.201 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.145, A:I.148, A:D.149, A:D.149 Water bridges: A:L.150, A:V.201 GOL.3: 8 residues within 4Å: Chain A: C.344, G.345, A.346, F.365, G.366, D.367, Q.368 Ligands: DLM.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.346, A:D.367, A:Q.368 Water bridges: A:S.16, A:S.16 GOL.4: 4 residues within 4Å: Chain A: L.150, D.153, K.154, D.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.153

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Hiromoto, T. et al., Structural basis for acceptor-substrate recognition of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea. Protein Sci. (2015)

Release Date

2015-01-21

Peptides

UDP-glucose:anthocyanidin 3-O-glucosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-glucose:anthocyanidin 3-O-glucosyltransferase

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