SMTL ID : 4reu.1

Revelation of Endogenously bound Fe2+ ions in the Crystal Structure of Ferritin from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-24-mer

Ligands

48 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.16, E.49, H.52, Q.126 Ligands: FE.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.16, A:E.49, A:H.52, H2O.1, H2O.1 FE.2: 5 residues within 4Å: Chain A: H.45, E.49, E.93, E.129 Ligands: FE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.49, A:E.93, A:E.93, A:E.129, H2O.1 FE.15: 5 residues within 4Å: Chain B: E.16, E.49, H.52, Q.126 Ligands: FE.16 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.16, B:E.49, B:H.52, H2O.2, H2O.2 FE.16: 7 residues within 4Å: Chain B: H.45, E.49, E.93, I.96, Q.126, E.129 Ligands: FE.15 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.49, B:E.93, B:E.93, B:E.129, H2O.2 FE.23: 5 residues within 4Å: Chain C: E.16, E.49, H.52, Q.126 Ligands: FE.24 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.16, C:E.49, C:H.52, H2O.3, H2O.4 FE.24: 5 residues within 4Å: Chain C: H.45, E.49, E.93, E.129 Ligands: FE.23 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.49, C:E.93, C:E.93, C:E.129, H2O.3 FE.30: 5 residues within 4Å: Chain D: E.16, E.49, H.52, Q.126 Ligands: FE.31 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.16, D:E.49, D:H.52, H2O.4, H2O.5 FE.31: 5 residues within 4Å: Chain D: H.45, E.49, E.93, E.129 Ligands: FE.30 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.49, D:E.93, D:E.93, D:E.129, H2O.4 FE.45: 5 residues within 4Å: Chain E: E.16, E.49, H.52, Q.126 Ligands: FE.46 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.16, E:E.49, E:H.52, H2O.6, H2O.6 FE.46: 5 residues within 4Å: Chain E: H.45, E.49, E.93, E.129 Ligands: FE.45 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.49, E:E.93, E:E.93, E:E.129, H2O.6 FE.54: 5 residues within 4Å: Chain F: E.16, E.49, H.52, Q.126 Ligands: FE.55 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.16, F:E.49, F:H.52, H2O.7, H2O.7 FE.55: 5 residues within 4Å: Chain F: H.45, E.49, E.93, E.129 Ligands: FE.54 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.49, F:E.93, F:E.93, F:E.129, H2O.7 FE.63: 5 residues within 4Å: Chain G: E.16, E.49, H.52, Q.126 Ligands: FE.64 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.16, G:E.49, G:H.52, H2O.8, H2O.9 FE.64: 5 residues within 4Å: Chain G: H.45, E.49, E.93, E.129 Ligands: FE.63 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:E.49, G:E.93, G:E.93, G:E.129, H2O.8 FE.77: 5 residues within 4Å: Chain H: E.16, E.49, H.52, Q.126 Ligands: FE.78 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:E.16, H:E.49, H:H.52, H2O.10, H2O.10 FE.78: 7 residues within 4Å: Chain H: H.45, E.49, E.93, I.96, Q.126, E.129 Ligands: FE.77 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.49, H:E.93, H:E.93, H:E.129, H2O.10 FE.85: 5 residues within 4Å: Chain I: E.16, E.49, H.52, Q.126 Ligands: FE.86 5 PLIP interactions: 3 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:E.16, I:E.49, I:H.52, H2O.11, H2O.11 FE.86: 5 residues within 4Å: Chain I: H.45, E.49, E.93, E.129 Ligands: FE.85 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:E.49, I:E.93, I:E.93, I:E.129, H2O.11 FE.92: 5 residues within 4Å: Chain J: E.16, E.49, H.52, Q.126 Ligands: FE.93 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.16, J:E.49, J:H.52, H2O.12, H2O.12 FE.93: 5 residues within 4Å: Chain J: H.45, E.49, E.93, E.129 Ligands: FE.92 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:E.49, J:E.93, J:E.93, J:E.129, H2O.12 FE.107: 5 residues within 4Å: Chain K: E.16, E.49, H.52, Q.126 Ligands: FE.108 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:E.16, K:E.49, K:H.52, H2O.14, H2O.14 FE.108: 5 residues within 4Å: Chain K: H.45, E.49, E.93, E.129 Ligands: FE.107 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:E.49, K:E.93, K:E.93, K:E.129, H2O.14 FE.116: 5 residues within 4Å: Chain L: E.16, E.49, H.52, Q.126 Ligands: FE.117 5 PLIP interactions: 3 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:E.16, L:E.49, L:H.52, H2O.15, H2O.15 FE.117: 5 residues within 4Å: Chain L: H.45, E.49, E.93, E.129 Ligands: FE.116 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:E.49, L:E.93, L:E.93, L:E.129, H2O.15 FE.125: 5 residues within 4Å: Chain M: E.16, E.49, H.52, Q.126 Ligands: FE.126 5 PLIP interactions: 3 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:E.16, M:E.49, M:H.52, H2O.16, H2O.16 FE.126: 5 residues within 4Å: Chain M: H.45, E.49, E.93, E.129 Ligands: FE.125 5 PLIP interactions: 4 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:E.49, M:E.93, M:E.93, M:E.129, H2O.16 FE.139: 5 residues within 4Å: Chain N: E.16, E.49, H.52, Q.126 Ligands: FE.140 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:E.16, N:E.49, N:H.52, H2O.18, H2O.18 FE.140: 7 residues within 4Å: Chain N: H.45, E.49, E.93, I.96, Q.126, E.129 Ligands: FE.139 5 PLIP interactions: 4 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:E.49, N:E.93, N:E.93, N:E.129, H2O.18 FE.147: 5 residues within 4Å: Chain O: E.16, E.49, H.52, Q.126 Ligands: FE.148 5 PLIP interactions: 3 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:E.16, O:E.49, O:H.52, H2O.18, H2O.19 FE.148: 5 residues within 4Å: Chain O: H.45, E.49, E.93, E.129 Ligands: FE.147 5 PLIP interactions: 4 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:E.49, O:E.93, O:E.93, O:E.129, H2O.18 FE.154: 5 residues within 4Å: Chain P: E.16, E.49, H.52, Q.126 Ligands: FE.155 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:E.16, P:E.49, P:H.52, H2O.19, H2O.20 FE.155: 5 residues within 4Å: Chain P: H.45, E.49, E.93, E.129 Ligands: FE.154 5 PLIP interactions: 4 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:E.49, P:E.93, P:E.93, P:E.129, H2O.19 FE.169: 5 residues within 4Å: Chain Q: E.16, E.49, H.52, Q.126 Ligands: FE.170 5 PLIP interactions: 3 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:E.16, Q:E.49, Q:H.52, H2O.21, H2O.21 FE.170: 5 residues within 4Å: Chain Q: H.45, E.49, E.93, E.129 Ligands: FE.169 5 PLIP interactions: 4 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:E.49, Q:E.93, Q:E.93, Q:E.129, H2O.21 FE.178: 5 residues within 4Å: Chain R: E.16, E.49, H.52, Q.126 Ligands: FE.179 5 PLIP interactions: 3 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:E.16, R:E.49, R:H.52, H2O.22, H2O.22 FE.179: 5 residues within 4Å: Chain R: H.45, E.49, E.93, E.129 Ligands: FE.178 5 PLIP interactions: 4 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:E.49, R:E.93, R:E.93, R:E.129, H2O.22 FE.187: 5 residues within 4Å: Chain S: E.16, E.49, H.52, Q.126 Ligands: FE.188 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:E.16, S:E.49, S:H.52, H2O.23, H2O.24 FE.188: 5 residues within 4Å: Chain S: H.45, E.49, E.93, E.129 Ligands: FE.187 5 PLIP interactions: 4 interactions with chain S, 1 Ligand-Water interactions Metal complexes: S:E.49, S:E.93, S:E.93, S:E.129, H2O.23 FE.201: 5 residues within 4Å: Chain T: E.16, E.49, H.52, Q.126 Ligands: FE.202 5 PLIP interactions: 3 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:E.16, T:E.49, T:H.52, H2O.25, H2O.25 FE.202: 7 residues within 4Å: Chain T: H.45, E.49, E.93, I.96, Q.126, E.129 Ligands: FE.201 5 PLIP interactions: 4 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:E.49, T:E.93, T:E.93, T:E.129, H2O.25 FE.209: 5 residues within 4Å: Chain U: E.16, E.49, H.52, Q.126 Ligands: FE.210 5 PLIP interactions: 3 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:E.16, U:E.49, U:H.52, H2O.26, H2O.26 FE.210: 5 residues within 4Å: Chain U: H.45, E.49, E.93, E.129 Ligands: FE.209 5 PLIP interactions: 4 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:E.49, U:E.93, U:E.93, U:E.129, H2O.26 FE.216: 5 residues within 4Å: Chain V: E.16, E.49, H.52, Q.126 Ligands: FE.217 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:E.16, V:E.49, V:H.52, H2O.27, H2O.28 FE.217: 5 residues within 4Å: Chain V: H.45, E.49, E.93, E.129 Ligands: FE.216 5 PLIP interactions: 4 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:E.49, V:E.93, V:E.93, V:E.129, H2O.27 FE.231: 5 residues within 4Å: Chain W: E.16, E.49, H.52, Q.126 Ligands: FE.232 5 PLIP interactions: 3 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:E.16, W:E.49, W:H.52, H2O.29, H2O.29 FE.232: 5 residues within 4Å: Chain W: H.45, E.49, E.93, E.129 Ligands: FE.231 5 PLIP interactions: 4 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:E.49, W:E.93, W:E.93, W:E.129, H2O.29 FE.240: 5 residues within 4Å: Chain X: E.16, E.49, H.52, Q.126 Ligands: FE.241 5 PLIP interactions: 3 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:E.16, X:E.49, X:H.52, H2O.30, H2O.30 FE.241: 5 residues within 4Å: Chain X: H.45, E.49, E.93, E.129 Ligands: FE.240 5 PLIP interactions: 4 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:E.49, X:E.93, X:E.93, X:E.129, H2O.30

76 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: Y.18, L.22, H.92, L.95 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: P.75, A.77, Y.79, E.88 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: E.78, Y.79, S.80, E.84 Ligand excluded by PLIP SO4.6: 1 residues within 4Å: Chain X: E.102 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: I.6, E.7, N.10, L.66 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain B: Y.18, H.92, L.95 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain B: E.48, D.161 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain C: Y.18, E.88, H.92, L.95 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain C: I.6, E.7, L.66 Ligand excluded by PLIP SO4.32: 2 residues within 4Å: Chain D: Q.111 Chain T: E.102 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain D: I.6, E.7, L.66 Ligand excluded by PLIP SO4.34: 3 residues within 4Å: Chain D: L.22, H.92, L.95 Ligand excluded by PLIP SO4.47: 4 residues within 4Å: Chain E: Y.18, K.91, H.92, L.95 Ligand excluded by PLIP SO4.48: 3 residues within 4Å: Chain E: E.78, Y.79, E.84 Ligand excluded by PLIP SO4.49: 2 residues within 4Å: Chain E: I.6, L.66 Ligand excluded by PLIP SO4.50: 7 residues within 4Å: Chain E: E.148 Chain K: E.148 Chain Q: E.148 Chain W: E.148 Ligands: SO4.112, SO4.174, SO4.236 Ligand excluded by PLIP SO4.51: 2 residues within 4Å: Chain E: A.77, E.88 Ligand excluded by PLIP SO4.56: 3 residues within 4Å: Chain F: Y.18, H.92, L.95 Ligand excluded by PLIP SO4.57: 4 residues within 4Å: Chain F: I.6, E.7, L.66, R.68 Ligand excluded by PLIP SO4.65: 4 residues within 4Å: Chain G: Y.18, L.22, H.92, L.95 Ligand excluded by PLIP SO4.66: 4 residues within 4Å: Chain G: P.75, A.77, Y.79, E.88 Ligand excluded by PLIP SO4.67: 4 residues within 4Å: Chain G: E.78, Y.79, S.80, E.84 Ligand excluded by PLIP SO4.68: 1 residues within 4Å: Chain R: E.102 Ligand excluded by PLIP SO4.69: 4 residues within 4Å: Chain G: I.6, E.7, N.10, L.66 Ligand excluded by PLIP SO4.79: 3 residues within 4Å: Chain H: Y.18, H.92, L.95 Ligand excluded by PLIP SO4.80: 2 residues within 4Å: Chain H: E.48, D.161 Ligand excluded by PLIP SO4.87: 4 residues within 4Å: Chain I: Y.18, E.88, H.92, L.95 Ligand excluded by PLIP SO4.88: 3 residues within 4Å: Chain I: I.6, E.7, L.66 Ligand excluded by PLIP SO4.94: 2 residues within 4Å: Chain J: Q.111 Chain N: E.102 Ligand excluded by PLIP SO4.95: 3 residues within 4Å: Chain J: I.6, E.7, L.66 Ligand excluded by PLIP SO4.96: 3 residues within 4Å: Chain J: L.22, H.92, L.95 Ligand excluded by PLIP SO4.109: 4 residues within 4Å: Chain K: Y.18, K.91, H.92, L.95 Ligand excluded by PLIP SO4.110: 3 residues within 4Å: Chain K: E.78, Y.79, E.84 Ligand excluded by PLIP SO4.111: 2 residues within 4Å: Chain K: I.6, L.66 Ligand excluded by PLIP SO4.112: 7 residues within 4Å: Chain E: E.148 Chain K: E.148 Chain Q: E.148 Chain W: E.148 Ligands: SO4.50, SO4.174, SO4.236 Ligand excluded by PLIP SO4.113: 2 residues within 4Å: Chain K: A.77, E.88 Ligand excluded by PLIP SO4.118: 3 residues within 4Å: Chain L: Y.18, H.92, L.95 Ligand excluded by PLIP SO4.119: 4 residues within 4Å: Chain L: I.6, E.7, L.66, R.68 Ligand excluded by PLIP SO4.127: 4 residues within 4Å: Chain M: Y.18, L.22, H.92, L.95 Ligand excluded by PLIP SO4.128: 4 residues within 4Å: Chain M: P.75, A.77, Y.79, E.88 Ligand excluded by PLIP SO4.129: 4 residues within 4Å: Chain M: E.78, Y.79, S.80, E.84 Ligand excluded by PLIP SO4.130: 1 residues within 4Å: Chain F: E.102 Ligand excluded by PLIP SO4.131: 4 residues within 4Å: Chain M: I.6, E.7, N.10, L.66 Ligand excluded by PLIP SO4.141: 3 residues within 4Å: Chain N: Y.18, H.92, L.95 Ligand excluded by PLIP SO4.142: 2 residues within 4Å: Chain N: E.48, D.161 Ligand excluded by PLIP SO4.149: 4 residues within 4Å: Chain O: Y.18, E.88, H.92, L.95 Ligand excluded by PLIP SO4.150: 3 residues within 4Å: Chain O: I.6, E.7, L.66 Ligand excluded by PLIP SO4.156: 2 residues within 4Å: Chain B: E.102 Chain P: Q.111 Ligand excluded by PLIP SO4.157: 3 residues within 4Å: Chain P: I.6, E.7, L.66 Ligand excluded by PLIP SO4.158: 3 residues within 4Å: Chain P: L.22, H.92, L.95 Ligand excluded by PLIP SO4.171: 4 residues within 4Å: Chain Q: Y.18, K.91, H.92, L.95 Ligand excluded by PLIP SO4.172: 3 residues within 4Å: Chain Q: E.78, Y.79, E.84 Ligand excluded by PLIP SO4.173: 2 residues within 4Å: Chain Q: I.6, L.66 Ligand excluded by PLIP SO4.174: 7 residues within 4Å: Chain E: E.148 Chain K: E.148 Chain Q: E.148 Chain W: E.148 Ligands: SO4.50, SO4.112, SO4.236 Ligand excluded by PLIP SO4.175: 2 residues within 4Å: Chain Q: A.77, E.88 Ligand excluded by PLIP SO4.180: 3 residues within 4Å: Chain R: Y.18, H.92, L.95 Ligand excluded by PLIP SO4.181: 4 residues within 4Å: Chain R: I.6, E.7, L.66, R.68 Ligand excluded by PLIP SO4.189: 4 residues within 4Å: Chain S: Y.18, L.22, H.92, L.95 Ligand excluded by PLIP SO4.190: 4 residues within 4Å: Chain S: P.75, A.77, Y.79, E.88 Ligand excluded by PLIP SO4.191: 4 residues within 4Å: Chain S: E.78, Y.79, S.80, E.84 Ligand excluded by PLIP SO4.192: 1 residues within 4Å: Chain L: E.102 Ligand excluded by PLIP SO4.193: 4 residues within 4Å: Chain S: I.6, E.7, N.10, L.66 Ligand excluded by PLIP SO4.203: 3 residues within 4Å: Chain T: Y.18, H.92, L.95 Ligand excluded by PLIP SO4.204: 2 residues within 4Å: Chain T: E.48, D.161 Ligand excluded by PLIP SO4.211: 4 residues within 4Å: Chain U: Y.18, E.88, H.92, L.95 Ligand excluded by PLIP SO4.212: 3 residues within 4Å: Chain U: I.6, E.7, L.66 Ligand excluded by PLIP SO4.218: 2 residues within 4Å: Chain H: E.102 Chain V: Q.111 Ligand excluded by PLIP SO4.219: 3 residues within 4Å: Chain V: I.6, E.7, L.66 Ligand excluded by PLIP SO4.220: 3 residues within 4Å: Chain V: L.22, H.92, L.95 Ligand excluded by PLIP SO4.233: 4 residues within 4Å: Chain W: Y.18, K.91, H.92, L.95 Ligand excluded by PLIP SO4.234: 3 residues within 4Å: Chain W: E.78, Y.79, E.84 Ligand excluded by PLIP SO4.235: 2 residues within 4Å: Chain W: I.6, L.66 Ligand excluded by PLIP SO4.236: 7 residues within 4Å: Chain E: E.148 Chain K: E.148 Chain Q: E.148 Chain W: E.148 Ligands: SO4.50, SO4.112, SO4.174 Ligand excluded by PLIP SO4.237: 2 residues within 4Å: Chain W: A.77, E.88 Ligand excluded by PLIP SO4.242: 3 residues within 4Å: Chain X: Y.18, H.92, L.95 Ligand excluded by PLIP SO4.243: 4 residues within 4Å: Chain X: I.6, E.7, L.66, R.68 Ligand excluded by PLIP

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.8: 5 residues within 4Å: Chain A: E.11, L.15, Y.18, N.70, E.73 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.70 MES.70: 5 residues within 4Å: Chain G: E.11, L.15, Y.18, N.70, E.73 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.70 MES.132: 5 residues within 4Å: Chain M: E.11, L.15, Y.18, N.70, E.73 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:N.70 MES.194: 5 residues within 4Å: Chain S: E.11, L.15, Y.18, N.70, E.73 1 PLIP interactions: 1 interactions with chain S Hydrogen bonds: S:N.70

108 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 1 residues within 4Å: Ligands: HG.27 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain A: Q.120 Chain C: Q.120 Chain X: Q.120 Ligands: HG.27 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain A: T.71 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain A: Q.111 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain A: N.101 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain A: E.73 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain B: Q.98, N.101 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain B: I.6, E.7, L.66, R.68 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain B: Q.98, E.102 Ligands: CL.22 Ligand excluded by PLIP CL.22: 2 residues within 4Å: Chain B: E.102 Ligands: CL.21 Ligand excluded by PLIP CL.28: 1 residues within 4Å: Chain C: A.77 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain C: E.48, D.161 Ligand excluded by PLIP CL.37: 1 residues within 4Å: Ligands: HG.35 Ligand excluded by PLIP CL.38: 4 residues within 4Å: Chain D: Q.120 Chain E: Q.120 Chain T: Q.120 Ligands: HG.35 Ligand excluded by PLIP CL.39: 2 residues within 4Å: Chain D: N.70, T.71 Ligand excluded by PLIP CL.40: 1 residues within 4Å: Chain D: N.101 Ligand excluded by PLIP CL.41: 1 residues within 4Å: Chain D: A.77 Ligand excluded by PLIP CL.42: 1 residues within 4Å: Chain D: E.78 Ligand excluded by PLIP CL.43: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.44: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.52: 1 residues within 4Å: Chain E: N.101 Ligand excluded by PLIP CL.53: 2 residues within 4Å: Chain E: E.48, D.161 Ligand excluded by PLIP CL.58: 2 residues within 4Å: Chain F: E.48, D.161 Ligand excluded by PLIP CL.59: 1 residues within 4Å: Chain F: H.33 Ligand excluded by PLIP CL.60: 1 residues within 4Å: Chain F: E.102 Ligand excluded by PLIP CL.61: 1 residues within 4Å: Chain F: N.101 Ligand excluded by PLIP CL.62: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.71: 1 residues within 4Å: Ligands: HG.89 Ligand excluded by PLIP CL.72: 4 residues within 4Å: Chain G: Q.120 Chain I: Q.120 Chain R: Q.120 Ligands: HG.89 Ligand excluded by PLIP CL.73: 1 residues within 4Å: Chain G: T.71 Ligand excluded by PLIP CL.74: 1 residues within 4Å: Chain G: Q.111 Ligand excluded by PLIP CL.75: 1 residues within 4Å: Chain G: N.101 Ligand excluded by PLIP CL.76: 1 residues within 4Å: Chain G: E.73 Ligand excluded by PLIP CL.81: 2 residues within 4Å: Chain H: Q.98, N.101 Ligand excluded by PLIP CL.82: 4 residues within 4Å: Chain H: I.6, E.7, L.66, R.68 Ligand excluded by PLIP CL.83: 3 residues within 4Å: Chain H: Q.98, E.102 Ligands: CL.84 Ligand excluded by PLIP CL.84: 2 residues within 4Å: Chain H: E.102 Ligands: CL.83 Ligand excluded by PLIP CL.90: 1 residues within 4Å: Chain I: A.77 Ligand excluded by PLIP CL.91: 2 residues within 4Å: Chain I: E.48, D.161 Ligand excluded by PLIP CL.99: 1 residues within 4Å: Ligands: HG.97 Ligand excluded by PLIP CL.100: 4 residues within 4Å: Chain J: Q.120 Chain K: Q.120 Chain N: Q.120 Ligands: HG.97 Ligand excluded by PLIP CL.101: 2 residues within 4Å: Chain J: N.70, T.71 Ligand excluded by PLIP CL.102: 1 residues within 4Å: Chain J: N.101 Ligand excluded by PLIP CL.103: 1 residues within 4Å: Chain J: A.77 Ligand excluded by PLIP CL.104: 1 residues within 4Å: Chain J: E.78 Ligand excluded by PLIP CL.105: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.106: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.114: 1 residues within 4Å: Chain K: N.101 Ligand excluded by PLIP CL.115: 2 residues within 4Å: Chain K: E.48, D.161 Ligand excluded by PLIP CL.120: 2 residues within 4Å: Chain L: E.48, D.161 Ligand excluded by PLIP CL.121: 1 residues within 4Å: Chain L: H.33 Ligand excluded by PLIP CL.122: 1 residues within 4Å: Chain L: E.102 Ligand excluded by PLIP CL.123: 1 residues within 4Å: Chain L: N.101 Ligand excluded by PLIP CL.124: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.133: 1 residues within 4Å: Ligands: HG.151 Ligand excluded by PLIP CL.134: 4 residues within 4Å: Chain F: Q.120 Chain M: Q.120 Chain O: Q.120 Ligands: HG.151 Ligand excluded by PLIP CL.135: 1 residues within 4Å: Chain M: T.71 Ligand excluded by PLIP CL.136: 1 residues within 4Å: Chain M: Q.111 Ligand excluded by PLIP CL.137: 1 residues within 4Å: Chain M: N.101 Ligand excluded by PLIP CL.138: 1 residues within 4Å: Chain M: E.73 Ligand excluded by PLIP CL.143: 2 residues within 4Å: Chain N: Q.98, N.101 Ligand excluded by PLIP CL.144: 4 residues within 4Å: Chain N: I.6, E.7, L.66, R.68 Ligand excluded by PLIP CL.145: 3 residues within 4Å: Chain N: Q.98, E.102 Ligands: CL.146 Ligand excluded by PLIP CL.146: 2 residues within 4Å: Chain N: E.102 Ligands: CL.145 Ligand excluded by PLIP CL.152: 1 residues within 4Å: Chain O: A.77 Ligand excluded by PLIP CL.153: 2 residues within 4Å: Chain O: E.48, D.161 Ligand excluded by PLIP CL.161: 1 residues within 4Å: Ligands: HG.159 Ligand excluded by PLIP CL.162: 4 residues within 4Å: Chain B: Q.120 Chain P: Q.120 Chain Q: Q.120 Ligands: HG.159 Ligand excluded by PLIP CL.163: 2 residues within 4Å: Chain P: N.70, T.71 Ligand excluded by PLIP CL.164: 1 residues within 4Å: Chain P: N.101 Ligand excluded by PLIP CL.165: 1 residues within 4Å: Chain P: A.77 Ligand excluded by PLIP CL.166: 1 residues within 4Å: Chain P: E.78 Ligand excluded by PLIP CL.167: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.168: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.176: 1 residues within 4Å: Chain Q: N.101 Ligand excluded by PLIP CL.177: 2 residues within 4Å: Chain Q: E.48, D.161 Ligand excluded by PLIP CL.182: 2 residues within 4Å: Chain R: E.48, D.161 Ligand excluded by PLIP CL.183: 1 residues within 4Å: Chain R: H.33 Ligand excluded by PLIP CL.184: 1 residues within 4Å: Chain R: E.102 Ligand excluded by PLIP CL.185: 1 residues within 4Å: Chain R: N.101 Ligand excluded by PLIP CL.186: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.195: 1 residues within 4Å: Ligands: HG.213 Ligand excluded by PLIP CL.196: 4 residues within 4Å: Chain L: Q.120 Chain S: Q.120 Chain U: Q.120 Ligands: HG.213 Ligand excluded by PLIP CL.197: 1 residues within 4Å: Chain S: T.71 Ligand excluded by PLIP CL.198: 1 residues within 4Å: Chain S: Q.111 Ligand excluded by PLIP CL.199: 1 residues within 4Å: Chain S: N.101 Ligand excluded by PLIP CL.200: 1 residues within 4Å: Chain S: E.73 Ligand excluded by PLIP CL.205: 2 residues within 4Å: Chain T: Q.98, N.101 Ligand excluded by PLIP CL.206: 4 residues within 4Å: Chain T: I.6, E.7, L.66, R.68 Ligand excluded by PLIP CL.207: 3 residues within 4Å: Chain T: Q.98, E.102 Ligands: CL.208 Ligand excluded by PLIP CL.208: 2 residues within 4Å: Chain T: E.102 Ligands: CL.207 Ligand excluded by PLIP CL.214: 1 residues within 4Å: Chain U: A.77 Ligand excluded by PLIP CL.215: 2 residues within 4Å: Chain U: E.48, D.161 Ligand excluded by PLIP CL.223: 1 residues within 4Å: Ligands: HG.221 Ligand excluded by PLIP CL.224: 4 residues within 4Å: Chain H: Q.120 Chain V: Q.120 Chain W: Q.120 Ligands: HG.221 Ligand excluded by PLIP CL.225: 2 residues within 4Å: Chain V: N.70, T.71 Ligand excluded by PLIP CL.226: 1 residues within 4Å: Chain V: N.101 Ligand excluded by PLIP CL.227: 1 residues within 4Å: Chain V: A.77 Ligand excluded by PLIP CL.228: 1 residues within 4Å: Chain V: E.78 Ligand excluded by PLIP CL.229: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.230: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.238: 1 residues within 4Å: Chain W: N.101 Ligand excluded by PLIP CL.239: 2 residues within 4Å: Chain W: E.48, D.161 Ligand excluded by PLIP CL.244: 2 residues within 4Å: Chain X: E.48, D.161 Ligand excluded by PLIP CL.245: 1 residues within 4Å: Chain X: H.33 Ligand excluded by PLIP CL.246: 1 residues within 4Å: Chain X: E.102 Ligand excluded by PLIP CL.247: 1 residues within 4Å: Chain X: N.101 Ligand excluded by PLIP CL.248: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

8 x HG: MERCURY (II) ION(Non-functional Binders)

HG.27: 2 residues within 4Å: Ligands: CL.9, CL.10 No protein-ligand interaction detected (PLIP) HG.35: 2 residues within 4Å: Ligands: CL.37, CL.38 No protein-ligand interaction detected (PLIP) HG.89: 2 residues within 4Å: Ligands: CL.71, CL.72 No protein-ligand interaction detected (PLIP) HG.97: 2 residues within 4Å: Ligands: CL.99, CL.100 No protein-ligand interaction detected (PLIP) HG.151: 2 residues within 4Å: Ligands: CL.133, CL.134 No protein-ligand interaction detected (PLIP) HG.159: 2 residues within 4Å: Ligands: CL.161, CL.162 No protein-ligand interaction detected (PLIP) HG.213: 2 residues within 4Å: Ligands: CL.195, CL.196 No protein-ligand interaction detected (PLIP) HG.221: 2 residues within 4Å: Ligands: CL.223, CL.224 No protein-ligand interaction detected (PLIP)

4 x MG: MAGNESIUM ION(Non-covalent)

MG.36: 2 residues within 4Å: Chain D: E.78, E.84 No protein-ligand interaction detected (PLIP) MG.98: 2 residues within 4Å: Chain J: E.78, E.84 No protein-ligand interaction detected (PLIP) MG.160: 2 residues within 4Å: Chain P: E.78, E.84 No protein-ligand interaction detected (PLIP) MG.222: 2 residues within 4Å: Chain V: E.78, E.84 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thiruselvam, V. et al., Revelation of endogenously bound Fe(2+) ions in the crystal structure of ferritin from Escherichia coli. Biochem.Biophys.Res.Commun. (2014)

Release Date

2014-10-22

Peptides

Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

M
A

N
B

O
C

P
D

Q
E

R
F

S
A

T
B

U
C

V
D

W
E

X
F

Ferritin