SMTL ID : 4rew.1

Crystal structure of the non-phosphorylated human alpha1 beta2 gamma1 holo-AMPK complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.58 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x STU: STAUROSPORINE(Non-covalent)

STU.1: 18 residues within 4Å: Chain A: L.14, G.15, V.16, G.17, V.22, A.35, K.37, M.85, E.86, Y.87, V.88, G.91, E.92, E.135, N.136, L.138, A.148, D.149 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.14, A:L.14, A:V.22, A:V.22, A:K.37, A:Y.87, A:L.138, A:L.138, A:D.149 Hydrogen bonds: A:V.88

3 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 12 residues within 4Å: Chain C: G.61, M.62, T.64, T.66, D.67, N.70, Y.98, L.106, V.107, I.127, H.128, R.129 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:M.62, C:T.66, C:D.67, C:N.70, C:V.107, C:V.107, C:H.128, C:R.129 Salt bridges: C:H.128, C:K.220 AMP.3: 16 residues within 4Å: Chain A: P.353, E.354 Chain C: R.47, K.147, I.217, S.219, F.221, D.222, R.246, G.252, V.253, L.254, V.274, H.275, R.276, L.277 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.219, C:D.222, C:R.246, C:R.246, C:L.254, C:L.254, C:H.275, A:P.353 Salt bridges: C:R.47, C:K.147, C:R.276 AMP.4: 16 residues within 4Å: Chain C: H.128, T.177, N.180, I.181, A.182, R.201, V.202, S.203, A.204, P.206, H.275, R.276, I.289, S.291, S.293, D.294 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:T.177, C:A.182, C:A.182, C:S.203, C:S.203, C:S.203, C:R.276, C:R.276, C:S.291, C:S.293, C:D.294 Salt bridges: C:H.128, C:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Structural basis of AMPK regulation by adenine nucleotides and glycogen. Cell Res. (2015)

Release Date

2014-12-10

Peptides

5'-AMP-activated protein kinase catalytic subunit alpha-1: A
5'-AMP-activated protein kinase subunit beta-2: B
5'-AMP-activated protein kinase subunit gamma-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

5'-AMP-activated protein kinase catalytic subunit alpha-1

5'-AMP-activated protein kinase subunit beta-2

5'-AMP-activated protein kinase subunit gamma-1

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