SMTL ID : 4rfr.1

Complex structure of AlkB/rhein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x RHN: 4,5-dihydroxy-9,10-dioxo-9,10-dihydroanthracene-2-carboxylic acid(Non-covalent)

RHN.1: 17 residues within 4Å: Chain A: N.107, Y.109, L.115, H.118, D.120, I.130, S.132, F.141, W.165, R.170, H.174, I.176, R.191, N.193, T.195, R.197 Ligands: MN.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.115, A:F.141, A:F.141, A:W.165, A:T.195 Hydrogen bonds: A:N.107, A:Y.109, A:S.132, A:R.197 Water bridges: A:D.120, A:H.174, A:R.197 Salt bridges: A:R.191 pi-Stacking: A:H.174

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.118, D.120, H.174 Ligands: RHN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.118, A:D.120, A:H.174, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Q. et al., Rhein Inhibits AlkB Repair Enzymes and Sensitizes Cells to Methylated DNA Damage. J.Biol.Chem. (2016)

Release Date

2016-04-06

Peptides

Alpha-ketoglutarate-dependent dioxygenase AlkB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Alpha-ketoglutarate-dependent dioxygenase AlkB